Error loading libraries in MAC

I have received a number of reports of problems with recent unversal  
Mac packages from CRAN when used with R 2.4.1.  Has something in the  
build script changed?

-G

Hi I just installed the gmodels package
and the installation was successful but when I was trying to load the
library I got an error (see below).
Interesting, yesterday I wrote to the maintainer of RSQLite apckage
because I got the same error.
Does somebody knows what is going on ??

thanks,
Mayte

library(gmodels)
Error in dyn.load(x, as.logical(local), as.logical(now)) :
	unable to load shared library '/Library/Frameworks/R.framework/
Versions/2.4/Resources/library/gtools/libs/i386/gtools.so':
   dlopen(/Library/Frameworks/R.framework/Versions/2.4/Resources/
library/gtools/libs/i386/gtools.so, 6): Library not loaded: /usr/
local/gcc4.0/i686-apple-darwin8/lib/libgcc_s.1.0.dylib
   Referenced from: /Library/Frameworks/R.framework/Versions/2.4/
Resources/library/gtools/libs/i386/gtools.so
   Reason: image not found
Error: package/namespace load failed for 'gmodels'

R.Version()
$platform
[1] "i386-apple-darwin8.8.1"

$arch
[1] "i386"

$os
[1] "darwin8.8.1"

$system
[1] "i386, darwin8.8.1"

$status
[1] ""

$major
[1] "2"

$minor
[1] "4.1"

$year
[1] "2006"

$month
[1] "12"

$day
[1] "18"

$`svn rev`
[1] "40228"

$language
[1] "R"

$version.string
[1] "R version 2.4.1 (2006-12-18)"

______________________________________________
R-help at stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting- 
guide.html
and provide commented, minimal, self-contained, reproducible code.
I'll chime in to note the same.  And just to add, sometimes restarting R seems 
to alleviate the problem....
I have received a number of reports of problems with recent unversal
Mac packages from CRAN when used with R 2.4.1.  Has something in the
build script changed?

-G

On Apr 18, 2007, at 4:49PM , Mayte Suarez-Farinas wrote:
Hi I just installed the gmodels package
and the installation was successful but when I was trying to load the
library I got an error (see below).
Interesting, yesterday I wrote to the maintainer of RSQLite apckage
because I got the same error.
Does somebody knows what is going on ??

thanks,
Mayte

library(gmodels)
Error in dyn.load(x, as.logical(local), as.logical(now)) :
	unable to load shared library '/Library/Frameworks/R.framework/
Versions/2.4/Resources/library/gtools/libs/i386/gtools.so':
   dlopen(/Library/Frameworks/R.framework/Versions/2.4/Resources/
library/gtools/libs/i386/gtools.so, 6): Library not loaded: /usr/
local/gcc4.0/i686-apple-darwin8/lib/libgcc_s.1.0.dylib
   Referenced from: /Library/Frameworks/R.framework/Versions/2.4/
Resources/library/gtools/libs/i386/gtools.so
   Reason: image not found
Error: package/namespace load failed for 'gmodels'

R.Version()
$platform
[1] "i386-apple-darwin8.8.1"

$arch
[1] "i386"

$os
[1] "darwin8.8.1"

$system
[1] "i386, darwin8.8.1"

$status
[1] ""

$major
[1] "2"

$minor
[1] "4.1"

$year
[1] "2006"

$month
[1] "12"

$day
[1] "18"

$`svn rev`
[1] "40228"

$language
[1] "R"

$version.string
[1] "R version 2.4.1 (2006-12-18)"

______________________________________________
R-help at stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-
guide.html
and provide commented, minimal, self-contained, reproducible code.

______________________________________________
R-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
same here.

weiwei
I'll chime in to note the same.  And just to add, sometimes restarting R seems
to alleviate the problem....

On Wednesday 18 April 2007 18:58, Gregory Warnes wrote:
I have received a number of reports of problems with recent unversal
Mac packages from CRAN when used with R 2.4.1.  Has something in the
build script changed?

-G

On Apr 18, 2007, at 4:49PM , Mayte Suarez-Farinas wrote:
Hi I just installed the gmodels package
and the installation was successful but when I was trying to load the
library I got an error (see below).
Interesting, yesterday I wrote to the maintainer of RSQLite apckage
because I got the same error.
Does somebody knows what is going on ??

thanks,
Mayte

library(gmodels)
Error in dyn.load(x, as.logical(local), as.logical(now)) :
    unable to load shared library '/Library/Frameworks/R.framework/
Versions/2.4/Resources/library/gtools/libs/i386/gtools.so':
   dlopen(/Library/Frameworks/R.framework/Versions/2.4/Resources/
library/gtools/libs/i386/gtools.so, 6): Library not loaded: /usr/
local/gcc4.0/i686-apple-darwin8/lib/libgcc_s.1.0.dylib
   Referenced from: /Library/Frameworks/R.framework/Versions/2.4/
Resources/library/gtools/libs/i386/gtools.so
   Reason: image not found
Error: package/namespace load failed for 'gmodels'

R.Version()
$platform
[1] "i386-apple-darwin8.8.1"

$arch
[1] "i386"

$os
[1] "darwin8.8.1"

$system
[1] "i386, darwin8.8.1"

$status
[1] ""

$major
[1] "2"

$minor
[1] "4.1"

$year
[1] "2006"

$month
[1] "12"

$day
[1] "18"

$`svn rev`
[1] "40228"

$language
[1] "R"

$version.string
[1] "R version 2.4.1 (2006-12-18)"

______________________________________________
R-help at stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-
guide.html
and provide commented, minimal, self-contained, reproducible code.

______________________________________________
R-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel

______________________________________________
R-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel

Weiwei Shi, Ph.D
Research Scientist
GeneGO, Inc.

"Did you always know?"
"No, I did not. But I believed..."
---Matrix III
HI Mayte & Gregory,

This is probably a question needing to be posted to r-sig-mac. A
search for this problem on that forum turns up lots of hits. I think
everyone is having these problems (which makes me pause about whether
to switch to Mac, given how much I use R). Below is a message from the
r-sig-mac forum from R/Mac guru Simon Urbanek:

Simon Urbanek  to Byron, r-sig-mac
 show details  9:53 am (6 hours ago)

Actually it appears that a variety of packages are doing this
(gtools did it to me earlier today). Looks like there may be a
general compilation change, perhaps in preparation for 2.5?

Yes, indeed, R 2.5.0 doesn't need the 4.0.3 compilers anymore and
thus no path changes. Unfortunately this seems to have influenced the
2.4 builds process. A hot fix is to install gcc4.0.3 from the full
image of R 2.4.1 (open the installation image, click on "Packages"
and then "gcc4.0.3" to install) or to use R 2.5.0 RC instead. I'll
see if I can find the culprit in the meantime...
I have received a number of reports of problems with recent unversal
Mac packages from CRAN when used with R 2.4.1.  Has something in the
build script changed?

-G

On Apr 18, 2007, at 4:49PM , Mayte Suarez-Farinas wrote:

Hi I just installed the gmodels package
and the installation was successful but when I was trying to load the
library I got an error (see below).
Interesting, yesterday I wrote to the maintainer of RSQLite apckage
because I got the same error.
Does somebody knows what is going on ??

thanks,
Mayte

library(gmodels)
Error in dyn.load(x, as.logical(local), as.logical(now)) :
      unable to load shared library '/Library/Frameworks/R.framework/
Versions/2.4/Resources/library/gtools/libs/i386/gtools.so':
   dlopen(/Library/Frameworks/R.framework/Versions/2.4/Resources/
library/gtools/libs/i386/gtools.so, 6): Library not loaded: /usr/
local/gcc4.0/i686-apple-darwin8/lib/libgcc_s.1.0.dylib
   Referenced from: /Library/Frameworks/R.framework/Versions/2.4/
Resources/library/gtools/libs/i386/gtools.so
   Reason: image not found
Error: package/namespace load failed for 'gmodels'

R.Version()
$platform
[1] "i386-apple-darwin8.8.1"

$arch
[1] "i386"

$os
[1] "darwin8.8.1"

$system
[1] "i386, darwin8.8.1"

$status
[1] ""

$major
[1] "2"

$minor
[1] "4.1"

$year
[1] "2006"

$month
[1] "12"

$day
[1] "18"

$`svn rev`
[1] "40228"

$language
[1] "R"

$version.string
[1] "R version 2.4.1 (2006-12-18)"

______________________________________________
R-help at stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-
guide.html
and provide commented, minimal, self-contained, reproducible code.

______________________________________________
R-help at stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Matthew C Keller
Postdoctoral Fellow
Virginia Institute for Psychiatric and Behavioral Genetics

HI Mayte & Gregory,

This is probably a question needing to be posted to r-sig-mac. A  
search for this problem on that forum turns up lots of hits. I  
think everyone is having these problems (which makes me pause about  
whether to switch to Mac, given how much I use R).
Sorry about that - it shouldn't make you pause as it was just a  
glitch in my build script because we changed compilers for the  
upcoming R 2.5.0 release.

It's all fixed now, the updated packages are on the master machine  
and should spread through the mirrors as we speak. (For those  
impatient, you can use http://r.research.att.com as a mirror to get  
the updated packages right now).

Cheers,
Simon

PS: To all: for Mac-related issues, please, always use R-SIG-Mac -  
read it and post there if you have problems. I usually try to respond  
ASAP.
On Apr 19, 2007, at 5:47 AM, Byron Ellis wrote:

Actually it appears that a variety of packages are doing this
(gtools did it to me earlier today). Looks like there may be a
general compilation change, perhaps in preparation for 2.5?

Yes, indeed, R 2.5.0 doesn't need the 4.0.3 compilers anymore and
thus no path changes. Unfortunately this seems to have influenced the
2.4 builds process. A hot fix is to install gcc4.0.3 from the full
image of R 2.4.1 (open the installation image, click on "Packages"
and then "gcc4.0.3" to install) or to use R 2.5.0 RC instead. I'll
see if I can find the culprit in the meantime...

On 4/18/07, Gregory Warnes <gregory.warnes at mac.com> wrote:
I have received a number of reports of problems with recent unversal
Mac packages from CRAN when used with R 2.4.1.  Has something in the
build script changed?

-G

On Apr 18, 2007, at 4:49PM , Mayte Suarez-Farinas wrote:

Hi I just installed the gmodels package
and the installation was successful but when I was trying to load  
the
library I got an error (see below).
Interesting, yesterday I wrote to the maintainer of RSQLite apckage
because I got the same error.
Does somebody knows what is going on ??

thanks,
Mayte

library(gmodels)
Error in dyn.load(x, as.logical(local), as.logical(now)) :
      unable to load shared library '/Library/Frameworks/ 
R.framework/
Versions/2.4/Resources/library/gtools/libs/i386/gtools.so':
   dlopen(/Library/Frameworks/R.framework/Versions/2.4/Resources/
library/gtools/libs/i386/gtools.so, 6): Library not loaded: /usr/
local/gcc4.0/i686-apple-darwin8/lib/libgcc_s.1.0.dylib
   Referenced from: /Library/Frameworks/R.framework/Versions/2.4/
Resources/library/gtools/libs/i386/gtools.so
   Reason: image not found
Error: package/namespace load failed for 'gmodels'

R.Version()
$platform
[1] "i386-apple-darwin8.8.1"

$arch
[1] "i386"

$os
[1] "darwin8.8.1"

$system
[1] "i386, darwin8.8.1"

$status
[1] ""

$major
[1] "2"

$minor
[1] "4.1"

$year
[1] "2006"

$month
[1] "12"

$day
[1] "18"

$`svn rev`
[1] "40228"

$language
[1] "R"

$version.string
[1] "R version 2.4.1 (2006-12-18)"

______________________________________________
R-help at stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-
guide.html
and provide commented, minimal, self-contained, reproducible code.

______________________________________________
R-help at stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting- 
guide.html
and provide commented, minimal, self-contained, reproducible code.

-- 
Matthew C Keller
Postdoctoral Fellow
Virginia Institute for Psychiatric and Behavioral Genetics

______________________________________________
R-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel