R help on 'strptime' has the following in "Details" section.
Specific to R is ?%OSn?, which for output gives the seconds truncated to ?0 <= n <= 6? decimal places (and if ?%OS? is not followed by a digit, it uses the setting of ?getOption("digits.secs")?, or if that is unset, ?n = 3?).
In reality, for output, if '%OS' is not followed by a digit and getOption("digits.secs") is unset, the output has no fractional part, as if n = 0 is used.
getOption("digits.secs")
NULL
z <- strptime("20/2/06 11:16:16.683", "%d/%m/%y %H:%M:%OS")
format(z, "%OS")
[1] "16"