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R-devel Digest, Vol 125, Issue 2

4 messages · gianluca mastrantonio, Peter Dalgaard, Simon Urbanek

gianluca mastrantonio
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Hi all,

I have a problem but i am not sure that this is the right mailing list.

I'm writing a R program which call a C++ program, through the function .Call. I use to compile the c++ script with the command 

R CMD SHLIB   SpTempWrapC.cpp -Wall -l covmodel.h -l util.h

Everything works fine since, for mistake, i paste in the terminal the content  of the r-script. Now, when i try to compile, i received the following error:

llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o SpTempWrapC.so SpTempWrapC.o -Wall -l covmodel.h -l util.h -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
covmodel.h:15:20: error: iostream: No such file or directory
covmodel.h:16:18: error: string: No such file or directory
covmodel.h:17: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?namespace?
covmodel.h:20: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?covmodel?
util.h:12:20: error: iostream: No such file or directory
util.h:13:19: error: iomanip: No such file or directory
util.h:14:18: error: string: No such file or directory
util.h:15:19: error: sstream: No such file or directory
util.h:16:18: error: vector: No such file or directory
util.h:17:15: error: map: No such file or directory
util.h:18: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?namespace?
util.h:20:15: error: R.h: No such file or directory
util.h:21:19: error: Rmath.h: No such file or directory
util.h:22:24: error: Rinternals.h: No such file or directory
util.h:23:26: error: R_ext/Lapack.h: No such file or directory
util.h:24:24: error: R_ext/BLAS.h: No such file or directory
util.h:25:25: error: R_ext/Utils.h: No such file or directory
util.h:29: error: expected declaration specifiers or ?...? before ?bool?

I also tried to reinstall R.

Thanks
Peter Dalgaard
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On Jul 4, 2013, at 09:34 , gianluca mastrantonio wrote:

            

      
      
      
    

        
That doesn't look right. "-l" is usually something with linking, "-I" intended?

            

      
      
      
    

        

      
      
    

        

  
    

      
      
    

  


  


      

    

    

      
      

        
      

    

    
1 day later

    

      
      

        


  

        

      Simon Urbanek
    

    

      
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On Jul 4, 2013, at 3:53 AM, gianluca mastrantonio wrote:

        

            

      
      
      
    

        
Well,then you probably meant

R CMD SHLIB   SpTempWrapC.cpp cov.model.cpp util.cpp

Cheers,
S