On Mon, 27 Mar 2006, Jussi T Lindgren wrote:
On Mon, 27 Mar 2006, Prof Brian Ripley wrote:
Not reproducible for me (and do you really think that something as simple as this would not have been found on x86_64 long before now?) This is almost certainly caused by your use of an inappropriate external BLAS. Something has probably been compiled for a different processor than the one you are using, since illegal instructions are a compiler (not R) issue that I have seen quite often on ix86 systems when this happened. Use --without-blas when recompiling R and see if it then works.
Thank you for the prompt reply. Disabling the external BLAS fixed the problem as you suspected. (As a minor curiosity, the problem was not caught by any tests ran by make check or make check-all -- but I do not presume here to speculate or guess whether the tests try out any such matrix calculations or not.). :)
They do. What the BLAS does will depend on the exact dimensions, so there will be very many paths through its code.
Thanks again, J.
On Mon, 27 Mar 2006, jtlindgr at cs.helsinki.fi wrote:
Matrix inner product seems to crash R2.2.1 on a 64bit arch. More precisely, the crash happens atleast if the matrix is non-square. The bug can be reproduced (atleast here) with bash$ bin/R
X<-matrix(data=0,nrow=100,ncol=10); mat<-X%*%t(X);
Illegal instruction bash$ The crash doesnt happen if the matrix is specified square, e.g. 10x10. The underlying OS was Linux version 2.6.12-xeon-csl3 (root at chuck) (gcc version 3.4.5 20050809 (prerelease) (Ubuntu 3.4.4-6ubuntu8)) #1 SMP Wed Feb 22 18:34:17 EET 2006 and its running on Intel(R) Xeon(TM) MP CPU 3.66GHz. I configured R from the source tar.gz myself; each phase of "./configure --with-x=no ; make ; make install" passed without aborting on any errors. Cheers, J. --please do not edit the information below-- Version: platform = x86_64-unknown-linux-gnu arch = x86_64 os = linux-gnu system = x86_64, linux-gnu status = major = 2 minor = 2.1 year = 2005 month = 12 day = 20 svn rev = 36812 language = R Locale: LC_CTYPE=fi_FI at euro;LC_NUMERIC=C;LC_TIME=en_US.ISO-8859-15;LC_COLLATE=en_US.IS O-8859-15;LC_MONETARY=fi_FI at euro;LC_MESSAGES=en_US.ISO-8859-15;LC_PAPER=C;LC_N AME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=C;LC_IDENTIFICATION=C Search Path: .GlobalEnv, package:methods, package:stats, package:graphics, package:grDevices, package:utils, package:datasets, Autoloads, package:base
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Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595