Dear All, recently I posted a probably difficult question concerning the installation and implementation of R-2.1.0 on the IBM p690 cluster "Jump" at the research centre in J?lich, Germany. We identified several modifications for an installation such as: (i) the installation of the most recent iconflib in the local user directory (ii) the configuration command OBJECT_MODE=64 MAKE=gmake CC="cc -DSTDC" SHLIB_LDFLAGS="-Wl,-G" F77="xlf" PREFIX=/home3/zdvex/ufzaloe ./configure --without-x --without-blas --without-readline --with-libiconv-prefix= =/home3/zdvex/ufzaloe/lib (iii) and the compilation command OBJECT_MODE=64 gmake (thanks to Christoph Pospiech for help). The really severe problem is, that the compilation now aboarts when making the survival R-library. This is what we get: gmake[3]: Leaving directory `/work/.j36/R.INSTALL.3207208/survival/src' ** R ** data ** moving datasets to lazyload DB ** inst ** preparing package for lazy loading /home3/zdvex/ufzaloe/R-2.1.0/bin/INSTALL[325]: 1364064 Illegal instruction(coredump) ERROR: lazy loading failed for package 'survival' ** Removing '/home3/zdvex/ufzaloe/R-2.1.0/library/survival' gmake[2]: *** [survival.ts] Error 1 gmake[2]: Leaving directory `/home3/zdvex/ufzaloe/R-2.1.0/src/library/Recommended' gmake[1]: *** [recommended-packages] Error 2 gmake[1]: Leaving directory `/home3/zdvex/ufzaloe/R-2.1.0/src/library/Recommended' gmake: *** [stamp-recommended] Error 2 ufzaloe@j36.!: (see attchment, zip archive of log-file). Besides the OS-problems (like missing readline implementation) it seems as if we need good help from the R developers community, as this most recent bug (compilation of survival) seems to an R problem. However, we are still strongly interested in getting this stuff running, any good suggestions very welcome! Cheers Ralf -------------- next part -------------- A non-text attachment was scrubbed... Name: putty.zip Type: application/x-tar Size: 25906 bytes Desc: not available Url : https://stat.ethz.ch/pipermail/r-devel/attachments/20050517/80fa4abf/putty.tar
Implementing R on IBM p690 cluster Jump
1 message · Ralf Seppelt