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Deferred Default Marker

7 messages · Terry Therneau, Peter Ehlers, jing hua zhao +1 more

#
I've finally narrowed down a puzzling problem: here is the short test
case.

tmt34% R --vanilla

R version 2.10.0 (2009-10-26)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
[,1]     [,2]
[1,] 7.916016 6.049698
[2,] 6.049698 7.650694
Loading required package: survival
Loading required package: splines
Loading required package: nlme
Loading required package: lattice
`__Deferred_Default_Marker__`

-----------------------------------------

Within the library is a definition of %*% for bdsmatrix objects, which
is perhaps the issue.  But I'm only guessing since I don't have a clear
idea what the error message means.  Any hints are appreciated.

The new coxme/bsdmatrix packages need only a couple more functions to be
a complete replacement for kinship, at which point we will depreciate
it. (Pedigrees and plotting were finished last weekend!)  But I can't
quite do that yet. The error does not arise with these newer libraries.
There have been no changes to kinship for some time.

  Terry Therneau
R version 2.10.0 (2009-10-26) 
x86_64-unknown-linux-gnu 

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=C              
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] splines   stats     graphics  grDevices utils     datasets
methods  
[8] base     
other attached packages:
[1] kinship_1.1.0-11 lattice_0.17-26  nlme_3.1-96      survival_2.35-9 

loaded via a namespace (and not attached):
[1] grid_2.10.0
#
Terry,

I don't see the problem in R 2.11.0 or R 2.10.1 Patched
(session info for R 2.10.1 below) with Windows (Vista).
I do get warnings about kinship having been built under
R 2.11.0 when I use R 2.10.1.

But I notice that your version of kinship looks somewhat
dated. Is that intentional?

   -Peter Ehlers

 > sessionInfo()
R version 2.10.1 Patched (2010-01-05 r50896)
i386-pc-mingw32

locale:
[1] LC_COLLATE=English_Canada.1252  LC_CTYPE=English_Canada.1252
[3] LC_MONETARY=English_Canada.1252 LC_NUMERIC=C
[5] LC_TIME=English_Canada.1252

attached base packages:
[1] splines   stats     graphics  grDevices utils     datasets  methods
[8] base

other attached packages:
[1] kinship_1.1.0-23 lattice_0.18-3   nlme_3.1-96      survival_2.35-8

loaded via a namespace (and not attached):
[1] grid_2.10.1
On 2010-04-23 9:20, Terry Therneau wrote:

  
    
2 days later
#
Cross compiling support has been dropped.
If you want to have it, please patch the sources yourself.
If you just want to get a Windows biunary of one package and you do not 
have a Windows machine around, you may use the service at:
http://win-builder.r-project.org/

Uwe Ligges
On 26.04.2010 12:55, jing hua zhao wrote:
#
Peter, 
  There was no particular reason for an older kinship; just hadn't
downloaded it in a while.  I grabbed a private copy just now and the
error went away, R 2.10.0. I remain curious as to what the message was
about, but not enough for either of us to do any work to find out.
   I've sent off a message to have a sysadmin update our servers with
the new copy of the library. 

  Thanks for looking at it.
       Terry

--------- begin included message------------

I don't see the problem in R 2.11.0 or R 2.10.1 Patched
(session info for R 2.10.1 below) with Windows (Vista).
I do get warnings about kinship having been built under
R 2.11.0 when I use R 2.10.1.

But I notice that your version of kinship looks somewhat
dated. Is that intentional?

   -Peter Ehlers