I have attempted to build the release R 2.1 on MacOS X 10.4 Tiger
using gcc 4.0
The build is dying thus:
building package 'graphics'
mkdir ../../../library/graphics
mkdir ../../../library/graphics/R
mkdir ../../../library/graphics/demo
mkdir ../../../library/graphics/po
mkdir ../../../library/graphics/man
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library '/Users/billn/Public/R/R-2.1.0/
build/library/grDevices/libs/grDevices.so':
dlopen(/Users/billn/Public/R/R-2.1.0/build/library/grDevices/libs/
grDevices.so, 6): Symbol not found: __cg_jpeg_resync_to_restart
Referenced from: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/
Versions/A/ImageIO
Expected in: /usr/local/lib/libJPEG.dylib
I don't really understand the error message.
grDevices.so exists:
[PBG4-BN:~] billn% otool -L /Users/billn/Public/R/R-2.1.0/build/
library/grDevices/libs/grDevices.so
/Users/billn/Public/R/R-2.1.0/build/library/grDevices/libs/grDevices.so:
/System/Library/Frameworks/AppKit.framework/Versions/C/
AppKit (compatibility version 45.0.0, current version 824.0.0)
libR.dylib (compatibility version 2.1.0, current version 2.1.0)
/usr/lib/libmx.A.dylib (compatibility version 1.0.0, current
version 92.0.0)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0,
current version 88.0.0)
but the reference to /usr/local/lib/libJPEG.dylib baffles me. The
library that is installed is called libjpeg.62.0.0.dylib and
symlinked as libjpeg.62.dylib and libjpeg.dylib.
Presumably __cg_jpeg_resync_to_restart is a symbol defined in
CoreGraphics, but why is it looking in the non-existent libJPEG ???
Bill Northcott
MacOS X 10.4 build problem
4 messages · Simon Urbanek, Bill Northcott
Bill,
On May 2, 2005, at 8:12 AM, Bill Northcott wrote:
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library '/Users/billn/Public/R/
R-2.1.0/build/library/grDevices/libs/grDevices.so':
dlopen(/Users/billn/Public/R/R-2.1.0/build/library/grDevices/libs/
grDevices.so, 6): Symbol not found: __cg_jpeg_resync_to_restart
Referenced from: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/
ImageIO.framework/Versions/A/ImageIO
Expected in: /usr/local/lib/libJPEG.dylib
It's a problem in your library setup. Your /usr/local/lib/ libJPEG.dylib conflicts with the system libJPEG.dylib from ImageIO framework (which is in /System/Library/Frameworks/ ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/ Versions/A/Resources/libJPEG.dylib). Since R forces the load of the one in /usr/local/lib first (as you configured it), it is loaded instead of the one in ImageIO framework, but it doesn't contain the same symbols, thus the load fails. You should remove /usr/local/ libJPEG.dylib and use static version or ImageIO instead. Cheers, Simon
On 02/05/2005, at 10:50 PM, Simon Urbanek wrote:
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library '/Users/billn/Public/R/
R-2.1.0/build/library/grDevices/libs/grDevices.so':
dlopen(/Users/billn/Public/R/R-2.1.0/build/library/grDevices/
libs/grDevices.so, 6): Symbol not found: __cg_jpeg_resync_to_restart
Referenced from: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/
ImageIO.framework/Versions/A/ImageIO
Expected in: /usr/local/lib/libJPEG.dylib
It's a problem in your library setup. Your /usr/local/lib/ libJPEG.dylib conflicts with the system libJPEG.dylib from ImageIO framework (which is in /System/Library/Frameworks/ ApplicationServices.framework/Versions/A/Frameworks/ ImageIO.framework/Versions/A/Resources/libJPEG.dylib). Since R forces the load of the one in /usr/local/lib first (as you configured it), it is loaded instead of the one in ImageIO framework, but it doesn't contain the same symbols, thus the load fails. You should remove /usr/local/libJPEG.dylib and use static version or ImageIO instead.
Ding! I get it. It is a problem with the case independent file system. libJPEG would be different from the gnu libjpeg, but on HFS+ it is not. Hence the confusion. I will try to look at it later. I think all I may need to do is remove the libjpeg.dylib symlink, which would Appleise it. Bill
On 02/05/2005, at 10:50 PM, Simon Urbanek wrote:
It's a problem in your library setup. Your /usr/local/lib/ libJPEG.dylib conflicts with the system libJPEG.dylib from ImageIO framework (which is in /System/Library/Frameworks/ ApplicationServices.framework/Versions/A/Frameworks/ ImageIO.framework/Versions/A/Resources/libJPEG.dylib). Since R forces the load of the one in /usr/local/lib first (as you configured it), it is loaded instead of the one in ImageIO framework, but it doesn't contain the same symbols, thus the load fails. You should remove /usr/local/libJPEG.dylib and use static version or ImageIO instead.
Removing the symlink did the trick. I notice that all the libraries in the ImageIO framework have capitalisation. I guess this stops them being linked by accidentally by GNU style builds but not vice versa. I now have a working R 2.1 built on Tiger with gcc-4.0/gfortran. Bill