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packages MANOR, qvalue, and tkWidgets fail install on Fedora 7 with latest R-beta build

2 messages · Mark Kimpel, Martin Morgan

#
Had some packages fail install so I updated to today's R-beta release. 
On updating packages the following packages still fail. sessionInfo 
follows. Mark

Warning messages:
1: In install.packages(update[instlib == l, "Package"], l, contriburl = 
contriburl,  :
   installation of package 'MANOR' had non-zero exit status
2: In install.packages(update[instlib == l, "Package"], l, contriburl = 
contriburl,  :
   installation of package 'qvalue' had non-zero exit status
3: In install.packages(update[instlib == l, "Package"], l, contriburl = 
contriburl,  :
   installation of package 'tkWidgets' had non-zero exit status
 > sessionInfo()
R version 2.6.0 beta (2007-09-18 r42895)
i686-pc-linux-gnu

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods
[8] base

other attached packages:
[1] limma_2.11.13          affy_1.15.9            preprocessCore_0.99.18
[4] affyio_1.5.11          Biobase_1.15.33        graph_1.15.20

loaded via a namespace (and not attached):
[1] cluster_1.11.8  rcompgen_0.1-15
#
Hi Mark --

sessionInfo and the warning messages are not enough here. Try to
install one of the failing packages and provide the complete
transcript of the process.

Consider sending this to the Bioconductor mailing lists (bioc-devel,
in particular, since these packages are in the development branch).

Martin

Mark W Kimpel <mkimpel at iupui.edu> writes: