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C headers
4 messages · Brian Ripley, Göran Broström, Adrian Dusa
This is an R-sig-mac issue, so Cc:ed there. I have seen this after an upgrade to Mavericks: you have a partial installation of the pre-Mavericks Xcode Command Line Tools after the upgrade (which removed some of it). See the current R-admin manual for how to use the CRAN binary of R 3.0.2 with Mavericks. Or get R_patched from r.research.att.com, which will change the compiler specs for you.
On 06/02/2014 08:49, Adrian Du?a wrote:
Dear list,
Just upgraded to MacOS Mavericks, fresh install of R 3.0.2 and trying to
install a previous version of my QCA package (the most recent one source
file, which passed the R CMD check --as-cran with R 3.0.1)
I seem to have some difficulties in the C code, apparently it doesn't find
some headers (please see below):
============
$ R CMD INSTALL --no-multiarch QCA.history/QCA_1.1-1.tar.gz
* installing to library
???/Library/Frameworks/R.framework/Versions/3.0/Resources/library???
* installing *source* package ???QCA??? ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99
-I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
-I/usr/local/include -fPIC -mtune=core2 -g -O2 -c allSol.c -o allSol.o
In file included from allSol.c:1:
/Library/Frameworks/R.framework/Resources/include/R.h:28:20: error:
stdlib.h: No such file or directory
/Library/Frameworks/R.framework/Resources/include/R.h:29:73: error:
stdio.h: No such file or directory
In file included from
/Library/Frameworks/R.framework/Resources/include/R.h:30,
from allSol.c:1:
/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/limits.h:15:25:
error: limits.h: No such file or directory
In file included from allSol.c:1:
/Library/Frameworks/R.framework/Resources/include/R.h:31:18: error: math.h:
No such file or directory
In file included from
/Library/Frameworks/R.framework/Resources/include/R.h:44,
from allSol.c:1:
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:26:47: error:
string.h: No such file or directory
In file included from allSol.c:2:
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:862: error:
expected declaration specifiers or ???...??? before ???FILE???
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:865: error:
expected declaration specifiers or ???...??? before ???FILE???
allSol.c: In function ???allSol???:
allSol.c:62: warning: implicit declaration of function ???div???
allSol.c:62: error: request for member ???quot??? in something not a structure
or union
allSol.c:62: error: request for member ???rem??? in something not a structure
or union
allSol.c:213: error: request for member ???quot??? in something not a structure
or union
allSol.c:213: error: request for member ???rem??? in something not a structure
or union
allSol.c:279: error: request for member ???quot??? in something not a structure
or union
allSol.c:279: error: request for member ???rem??? in something not a structure
or union
make: *** [allSol.o] Error 1
ERROR: compilation failed for package ???QCA???
* removing
???/Library/Frameworks/R.framework/Versions/3.0/Resources/library/QCA???
* restoring previous
???/Library/Frameworks/R.framework/Versions/3.0/Resources/library/QCA???
============
It doesn't find stdlib.h, stdio.h, limits.h, math.h, string.h (etc,
basically all important ones).
I have Xcode version 5.0.2 installed, do I need anything else installed in
the system?
Thank you,
Adrian
______________________________________________ R-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595
I went through this pain two days ago, but I managed both building R from source and my own packages by following Brian Ripley excellent (as always) pointers on the r-sig-mac mailing list (around october 2013). Look there, and ask further questions on that list. G?ran Brostr?m
On 02/06/2014 09:49 AM, Adrian Du?a wrote:
Dear list,
Just upgraded to MacOS Mavericks, fresh install of R 3.0.2 and trying to
install a previous version of my QCA package (the most recent one source
file, which passed the R CMD check --as-cran with R 3.0.1)
I seem to have some difficulties in the C code, apparently it doesn't find
some headers (please see below):
============
$ R CMD INSTALL --no-multiarch QCA.history/QCA_1.1-1.tar.gz
* installing to library
?/Library/Frameworks/R.framework/Versions/3.0/Resources/library?
* installing *source* package ?QCA? ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99
-I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
-I/usr/local/include -fPIC -mtune=core2 -g -O2 -c allSol.c -o allSol.o
In file included from allSol.c:1:
/Library/Frameworks/R.framework/Resources/include/R.h:28:20: error:
stdlib.h: No such file or directory
/Library/Frameworks/R.framework/Resources/include/R.h:29:73: error:
stdio.h: No such file or directory
In file included from
/Library/Frameworks/R.framework/Resources/include/R.h:30,
from allSol.c:1:
/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/limits.h:15:25:
error: limits.h: No such file or directory
In file included from allSol.c:1:
/Library/Frameworks/R.framework/Resources/include/R.h:31:18: error: math.h:
No such file or directory
In file included from
/Library/Frameworks/R.framework/Resources/include/R.h:44,
from allSol.c:1:
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:26:47: error:
string.h: No such file or directory
In file included from allSol.c:2:
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:862: error:
expected declaration specifiers or ?...? before ?FILE?
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:865: error:
expected declaration specifiers or ?...? before ?FILE?
allSol.c: In function ?allSol?:
allSol.c:62: warning: implicit declaration of function ?div?
allSol.c:62: error: request for member ?quot? in something not a structure
or union
allSol.c:62: error: request for member ?rem? in something not a structure
or union
allSol.c:213: error: request for member ?quot? in something not a structure
or union
allSol.c:213: error: request for member ?rem? in something not a structure
or union
allSol.c:279: error: request for member ?quot? in something not a structure
or union
allSol.c:279: error: request for member ?rem? in something not a structure
or union
make: *** [allSol.o] Error 1
ERROR: compilation failed for package ?QCA?
* removing
?/Library/Frameworks/R.framework/Versions/3.0/Resources/library/QCA?
* restoring previous
?/Library/Frameworks/R.framework/Versions/3.0/Resources/library/QCA?
============
It doesn't find stdlib.h, stdio.h, limits.h, math.h, string.h (etc,
basically all important ones).
I have Xcode version 5.0.2 installed, do I need anything else installed in
the system?
Thank you,
Adrian
5 days later
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