Gabor,
What I want is a bit more than hyperlinks, although I did ask the
package developer about that to. My idea is, from within R, place things
like pdf files and .Rdata directly into an Excel spreadsheet. As a
practical matter, if I can create a report with some data that someone
else can manipulate as a "regular" spreadsheet (ex. sort gene lists) and
then have other sheets that contain pdf output files of graphs I do
within R. I would also like to archive my R workspace at time of
analysis so that I could, if I had to, the analysis again. As I and
others are constantly tweaking what functions do, it is sometimes
impossible for me to go back and figure out what versions of what
functions I was using. sessionInfo won't do what I want.
Since Hans-Peter came up with his really nice package, I thought I would
throw this out as an idea. I have been doing this manually for some time
and my boss likes it because he only has to get one file from me, not
10. I include worksheets with the values of parameters passed to
functions, abbreviations, etc. Then 5 months from now and he wants me to
explain the sheet to him, everything is in one place.
In a way, I want to treat an Excel spreadsheet as a list (the workbook)
that can contain different kinds of objects (spreadsheets, pdfs, Rdata,
ex.). The Excel file acts as a binder for these different files. My boss
doesn't even want to deal with zipped files because when they are
unzipped he ends up with tons of files.
I know this might not make a lot of sense to UNIX users who mostly
interact with other programmers, but for those of us who deal with the
computer-barely-literate biologists who run Windows, it could be a nice
way of keeping things together.
BTW, I only mention Excel and Windows because that is what I use. I
think it would be great to come up with a common format that Linux, Mac,
and UNIX users could use. Could openOffice serve that purpose?
Thanks for your input.
Mark
Gabor Grothendieck wrote:
Its not entirely clear to me what it is that you are looking
for. Maybe you want to create an Excel spreadsheet with a hyperlink
to a web page? This R code will do that. It requires a Windows machine
that
has Excel running on it.
library(RDCOMClient)
xl <- COMCreate("Excel.Application")
xl[["Visible"]] <- TRUE
wkbk <- xl$Workbooks()$Add()
sh <- xl$ActiveSheet()
B2R <- sh$Range("B3")
B2R[["Formula"]] <- '=HYPERLINK("http://www.r-project.org")'
wkbk$SaveAs("\\test-url.xls")
xl$Quit()
On 2/8/07, Mark W Kimpel <mwkimpel at gmail.com> wrote:
Hans-Peter and other R developers,
How are you? Have you made any progess with embedding Url's in Excel?
Well, I have been busy thinking of more things for you to do;)
My colleagues in the lab are not R literate, and some are barely
computer literate, so I give them everything in Excel workbooks. I have
gradually evolved a system such that these workbooks have become
compendia of my data, output, and methods. That, in fact, is why I
bought the Pro version of xlsReadWritePro. I have been saving graphics
as PDF files, then inserting them as object in Excel sheets.
What I would like to be able to do is to embed objects (files) in sheets
of a workbook directly from within R. I would also like to be able to
save my current R workspace as an object embedded in a sheet so that in
the future, if packages change, I could go back and recreate the
analysis. I do not need to be able to manuipulate files that R has not
created, like a PDF file from another user. I would, however, like to be
able to save my graphics as PDF files inside a worksheet, even if it
meant creating a temp file or something.
Before people begin talking about how MySQL or some other database could
handle all that archiving, let me say that that is not what my
colleagues want. They want a nice Excel file that they can take home on
there laptops. One thing I like about worksheets is that they themselves
can contain many embedded files, so it keeps our virtual desks neater
and less confusing.
Hans, if you could do this, it would be of tremendous benefit to me and
hopefully a lot of people. R developers tend to think that all
scientists are running Linux on 64-bit computers, but most biomedical
researches still store date in Excel files. This won't solve everybody's
needs, but it could be a start.
Well, let me know what you think. I am cc'ing R-devel to see if any of
those guys have ideas as well.
Thanks,
Mark
--
Mark W. Kimpel MD
Neuroinformatics
Department of Psychiatry
Indiana University School of Medicine