Dear bug-busters, This week I've posted a message to the R-help mailing to inquire if anybody had experienced alike me. When I run the following GLM: glm(n~s+c+m, family=quasi(link=log, variance=mu)) several times using exactly the same dataset R crashes at random. I have tried to probe into the problem by tracking the response times of the above function with system.time (e.g. system.time(glm ....)) I noticed that the response times increased in subsequent calls to the function, at some (random) point leading to a crash. So it looked as if R was "leaking" somewhere. Then I started all-over again (restarted PC) and released before the glm-command a gc-command to collect the garbage. That works rather well and the crashing seems less frequent (mostly after 3-4 times issueing the glm-command) . Also the increasing response times changed into a stable component with one big exception, the First Call. Every time after fully re-starting R I issued gc() and then the glm-command . This call is about 1/3 or so of the time spend in the subsequent calls. Looking at the Ncells/Vcells hardly any difference exists, on average the Ncells/Vcells (virgin state of the program) are about 50 cells bigger than after the subsequent glm-commands. In the table below you can see the effects I just mentioned, notice the "odd" behaviour of the default Vsize. Table: response times glm function at varying Vsizes. Vsize 1st response subsequent default 47.57 27.96 8M 39.27 62.15 16M 38.44 62.37 32M 13.34 32.77 64M 10.13 34.28 128M 11.45 34.21 Im using R 0.64.1 on Win95.. Maybe someone of your team can tell me more on the nature of this "thing". Hoping not to bug to much, greetings Cor Berrevoets -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-devel-request@stat.math.ethz.ch _._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._
glm crash (PR#197)
3 messages · Cor.Berrevoets@gironet.nl, Thomas Lumley, Guido Masarotto) (Guido Masarotto
On Fri, 21 May 1999 Cor.Berrevoets@gironet.nl wrote:
Dear bug-busters, This week I've posted a message to the R-help mailing to inquire if anybody had experienced alike me. When I run the following GLM: glm(n~s+c+m, family=quasi(link=log, variance=mu)) several times using exactly the same dataset R crashes at random. I have tried to probe into the problem by tracking the response times of the above function with system.time (e.g. system.time(glm ....))
This could be some nasty form of memory problem, but it is difficult to tell. With a program as complex as R it is very hard to diagnose bugs from symptoms like this. At a minimum we need to know exactly what message R gives, however this probably isn't enough. An example data set that reliably produces the problem gives us a chance to track the bug down and at least makes it easy to distinguish Windows-based bugs from general-purpose bugs. -thomas Thomas Lumley Assistant Professor, Biostatistics University of Washington, Seattle -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-devel-request@stat.math.ethz.ch _._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._
On Fri, May 21, 1999 at 08:04:12PM +0200, Cor.Berrevoets@gironet.nl wrote:
Dear bug-busters, This week I've posted a message to the R-help mailing to inquire if
Cor, I apologize for not asking you what follows after your first message.
anybody had experienced alike me. When I run the following GLM: glm(n~s+c+m, family=quasi(link=log, variance=mu))
Could you send me the data? I will try to replicate the error both under Windows and some flavour of Unixes to try to understand what is going on. Have you got into similar problem with previous version? guido -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-devel-request@stat.math.ethz.ch _._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._