Hello, All: ????? What's the status and future plans for R-Forge? ????? I ask primarily because a problem I reported May 15 and 17 via two different channels has yet to be fixed, and it prevents my development versions of the Ecdat and Ecfun packages from building -- because the Windows version cannot find "Matrix";? see below. Secondarily, the version of R that R-Forge tried to use earlier today was 3.5.3 -- NOT the current version. ????? Assuming you recommend migrating to GitHub, do you have a preferred procedure?? I found "https://gist.github.com/friendly/7269490".? This says it was "Last active 2 years ago" but seems to be the most current advice I can find on this right now.? That looks complicated, but I assume it preserves the edit history on R-Forge. ??? ??? ? Thanks, ??? ? Spencer Graves -------- Forwarded Message -------- Subject: Error : package 'Ecfun' could not be loaded Date: Fri, 17 May 2019 18:41:12 -0500 From: Spencer Graves <spencer.graves at prodsyse.com> To: r-forge at r-project.org Hello: ????? Your Windows platform cannot find "Matrix" and other packages.? See: https://r-forge.r-project.org/R/?group_id=1439&add_log=check_x86_64_windows&pkg=Ecdat&flavor=patched&type=00install.out ????? I reported this to your Support tracker two days ago: https://r-forge.r-project.org/tracker/?atid=194&group_id=34&func=browse ????? Can someone please fix this? ????? Or is it now the official policy of R-Forge to ask people to go someplace else, e.g., GitHub? ????? From what I know, the basic design of R-Forge is vastly superior to GitHub for packages submitted to CRAN.? However, I've encountered numerous reliability problems with R-Forge in recent years. ????? Thanks, ????? Spencer Graves
R-Forge > GitHub?
24 messages · Duncan Murdoch, Henrik Bengtsson, Lionel Henry +6 more
On 26/06/2019 10:34 a.m., Spencer Graves wrote:
Hello, All: ????? What's the status and future plans for R-Forge? ????? I ask primarily because a problem I reported May 15 and 17 via two different channels has yet to be fixed, and it prevents my development versions of the Ecdat and Ecfun packages from building -- because the Windows version cannot find "Matrix";? see below. Secondarily, the version of R that R-Forge tried to use earlier today was 3.5.3 -- NOT the current version. ????? Assuming you recommend migrating to GitHub, do you have a preferred procedure?? I found "https://gist.github.com/friendly/7269490".? This says it was "Last active 2 years ago" but seems to be the most current advice I can find on this right now.? That looks complicated, but I assume it preserves the edit history on R-Forge. ???
R-Forge is mirrored on Github; see https://github.com/rforge/ecdat, for example. That shows 418 commits in its history; presumably that's the full R-forge history. I think that's newer than Michael Friendly's gist. So I suspect (but haven't tried to do this) that migration now is as simple as doing a Github fork to your own Github account, and then basically forgetting about the R-forge stuff, or deleting it (and I don't know how to do that). Duncan Murdoch
On 26 Jun 2019, at 17:25, Duncan Murdoch <murdoch.duncan at gmail.com> wrote: R-Forge is mirrored on Github; see https://github.com/rforge/ecdat, for example. That shows 418 commits in its history; presumably that's the full R-forge history. I think that's newer than Michael Friendly's gist. So I suspect (but haven't tried to do this) that migration now is as simple as doing a Github fork to your own Github account, and then basically forgetting about the R-forge stuff, or deleting it (and I don't know how to do that).
I think it's better to avoid the Fork button in this case, because forks are treated specially in the Github UI. In this case you'll want your repo to appear as a main repo, and not a fork. AFAIK the only way to unfork a repo is to ask the Github staff to do it. So instead of forking, use the "+" button on github.com and select "Import a repository". This supports both git and svn repos. Best, Lionel
One thing that needs manual work is making each SVN username mP to a Git (username, email address). This often involved asking contributors what their preferred endless Git address is. The email address is what for instance GitHub uses to associate a commit authorship with a user account. You can register multiple emails addresses per GitHub account. As far as I remember, this also how GitLab and Bitbucket work. AFAIK, the Git username is not really used, but I might be wrong. You can rewrite the authorship in the Git history to get this correct, but you want to get that right before going public v if you rewrite the history and "force" push you'll make life hard for anyone who already cloned. /Henrik
????? Thanks to Duncan, Lionel and Henrik for their quick replies. I have further questions: ??? ?? ???? 1.? Will GitHub automatically transfer the commits I made to R-Forge in the past couple of days?? R-Forge is now at Rev. 420, and GitHub is still at 418.? Will 419 and 420 be automatically mirrored onto "https://github.com/rforge/ecdat" sometime in the next 24 hours or so?? Is there something easy I can do to force that update? ??? ?? ???? 2.? Is there a way to make this GitHub version the master?? It currently says it is a 'Read-only mirror of "ecdat" from r-forge SVN.'? I can probably change "r-forge.r-project.org/projects/ecdat" so I'm the only one authorized to make changes there and then stop committing changes there.? However, before I do that, I'd want to make sure I can commit directly to the GitHub version, etc. ??? ?? ???? 3.? How can I make myself the owner and a contributor for the GitHub version?? I'm a "Project Admin" on the R-Forge version, but currently no one can make any changes to the GitHub version except via R-Forge.? There must be a recommended migration process. ????? I could create a separate version of this package on GitHub, but all the history would be lost. ????? Thanks again, ????? Spencer Graves
On 2019-06-26 10:35, Lionel Henry wrote:
On 26 Jun 2019, at 17:25, Duncan Murdoch <murdoch.duncan at gmail.com> wrote: R-Forge is mirrored on Github; see https://github.com/rforge/ecdat, for example. That shows 418 commits in its history; presumably that's the full R-forge history. I think that's newer than Michael Friendly's gist. So I suspect (but haven't tried to do this) that migration now is as simple as doing a Github fork to your own Github account, and then basically forgetting about the R-forge stuff, or deleting it (and I don't know how to do that).
I think it's better to avoid the Fork button in this case, because forks are treated specially in the Github UI. In this case you'll want your repo to appear as a main repo, and not a fork. AFAIK the only way to unfork a repo is to ask the Github staff to do it. So instead of forking, use the "+" button on github.com and select "Import a repository". This supports both git and svn repos. Best, Lionel
I think all 3 issues are solved by: 1. Use the "+" button on github.com <http://github.com/> and select "Import a repository". 2. Pass the URL of your SVN repo. Lionel
On 26 Jun 2019, at 18:58, Spencer Graves <spencer.graves at prodsyse.com> wrote:
Thanks to Duncan, Lionel and Henrik for their quick replies. I have further questions:
1. Will GitHub automatically transfer the commits I made to R-Forge in the past couple of days? R-Forge is now at Rev. 420, and GitHub is still at 418. Will 419 and 420 be automatically mirrored onto "https://github.com/rforge/ecdat" sometime in the next 24 hours or so? Is there something easy I can do to force that update?
2. Is there a way to make this GitHub version the master? It currently says it is a 'Read-only mirror of "ecdat" from r-forge SVN.' I can probably change "r-forge.r-project.org/projects/ecdat" so I'm the only one authorized to make changes there and then stop committing changes there. However, before I do that, I'd want to make sure I can commit directly to the GitHub version, etc.
3. How can I make myself the owner and a contributor for the GitHub version? I'm a "Project Admin" on the R-Forge version, but currently no one can make any changes to the GitHub version except via R-Forge. There must be a recommended migration process.
I could create a separate version of this package on GitHub, but all the history would be lost.
Thanks again,
Spencer Graves
On 2019-06-26 10:35, Lionel Henry wrote:
On 26 Jun 2019, at 17:25, Duncan Murdoch <murdoch.duncan at gmail.com> wrote: R-Forge is mirrored on Github; see https://github.com/rforge/ecdat, for example. That shows 418 commits in its history; presumably that's the full R-forge history. I think that's newer than Michael Friendly's gist. So I suspect (but haven't tried to do this) that migration now is as simple as doing a Github fork to your own Github account, and then basically forgetting about the R-forge stuff, or deleting it (and I don't know how to do that).
I think it's better to avoid the Fork button in this case, because forks are treated specially in the Github UI. In this case you'll want your repo to appear as a main repo, and not a fork. AFAIK the only way to unfork a repo is to ask the Github staff to do it. So instead of forking, use the "+" button on github.com and select "Import a repository". This supports both git and svn repos. Best, Lionel
????? Thanks.? I'm still having problems: ??? ??????? 1.? I went to "github.com" and logged in with my standard GitHub account ??? ??????? 2.? Then I clicked "+" in the upper right, just left of my GitHub ID icon, and selected "Import a repository", as Lionel suggested. ??? ??????? 3.? " Your old repository?s clone URL" = "https://r-forge.r-project.org/projects/ecdat/" with "Name" = "Ecdat". ??? ?? ?? ??????? ** >> This failed, first giving me a 500 failure code, then reporting " Repository creation failed."? When I tried it again, I got, "The repository Ecdat already exists on this account." ????? What do you suggest I try next? ????? Thanks, ????? Spencer
On 2019-06-26 12:02, Lionel Henry wrote:
I think all 3 issues are solved by: 1. Use the "+" button on github.com <http://github.com>?and select "Import a repository". 2. Pass the URL of your SVN repo. Lionel
On 26 Jun 2019, at 18:58, Spencer Graves <spencer.graves at prodsyse.com <mailto:spencer.graves at prodsyse.com>> wrote: ????? Thanks to Duncan, Lionel and Henrik for their quick replies. I have further questions: ??? ?? ???? 1.? Will GitHub automatically transfer the commits I made to R-Forge in the past couple of days? R-Forge is now at Rev. 420, and GitHub is still at 418. Will 419 and 420 be automatically mirrored onto "https://github.com/rforge/ecdat" sometime in the next 24 hours or so?? Is there something easy I can do to force that update? ??? ?? ???? 2.? Is there a way to make this GitHub version the master?? It currently says it is a 'Read-only mirror of "ecdat" from r-forge SVN.'? I can probably change "r-forge.r-project.org/projects/ecdat <http://r-forge.r-project.org/projects/ecdat>" so I'm the only one authorized to make changes there and then stop committing changes there.? However, before I do that, I'd want to make sure I can commit directly to the GitHub version, etc. ??? ?? ???? 3.? How can I make myself the owner and a contributor for the GitHub version?? I'm a "Project Admin" on the R-Forge version, but currently no one can make any changes to the GitHub version except via R-Forge.? There must be a recommended migration process. ????? I could create a separate version of this package on GitHub, but all the history would be lost. ????? Thanks again, ????? Spencer Graves On 2019-06-26 10:35, Lionel Henry wrote:
On 26 Jun 2019, at 17:25, Duncan Murdoch <murdoch.duncan at gmail.com <mailto:murdoch.duncan at gmail.com>> wrote: R-Forge is mirrored on Github; see https://github.com/rforge/ecdat, for example. ?That shows 418 commits in its history; presumably that's the full R-forge history. ?I think that's newer than Michael Friendly's gist. So I suspect (but haven't tried to do this) that migration now is as simple as doing a Github fork to your own Github account, and then basically forgetting about the R-forge stuff, or deleting it (and I don't know how to do that).
I think it's better to avoid the Fork button in this case, because forks are treated specially in the Github UI. In this case you'll want your repo to appear as a main repo, and not a fork. AFAIK the only way to unfork a repo is to ask the Github staff to do it. So instead of forking, use the "+" button on github.com <http://github.com> and select "Import a repository". This supports both git and svn repos. Best, Lionel
On 26/06/2019 1:38 p.m., Spencer Graves wrote:
????? Thanks.? I'm still having problems: ??? ??????? 1.? I went to "github.com" and logged in with my standard GitHub account ??? ??????? 2.? Then I clicked "+" in the upper right, just left of my GitHub ID icon, and selected "Import a repository", as Lionel suggested. ??? ??????? 3.? " Your old repository?s clone URL" = "https://r-forge.r-project.org/projects/ecdat/" with "Name" = "Ecdat". ??? ?? ?? ??????? ** >> This failed, first giving me a 500 failure code, then reporting " Repository creation failed."? When I tried it again, I got, "The repository Ecdat already exists on this account." ????? What do you suggest I try next?
How complicated is your R-forge repository? Are you hosting more than one package there? Are you using branches and tags? If it's really simple, I'd recommend importing from the Github read-only copy, rather than from R-forge. R-forge has a non-standard setup for repositories, and you probably don't want to import that to Github. (A few years ago devtools didn't even work properly on R-forge because of the non-standard setup. I don't know if Github will be able to handle it.) The creator of "https://github.com/rforge/ecdat" simplified things a lot, ignoring branches, tags, etc. For most repositories, this is fine. Your first step will probably be to delete the existing ecdat repository which showed up in your second error message. Instructions for that are here: https://help.github.com/en/articles/deleting-a-repository. Duncan Murdoch
????? Thanks, ????? Spencer On 2019-06-26 12:02, Lionel Henry wrote:
I think all 3 issues are solved by: 1. Use the "+" button on github.com <http://github.com>?and select "Import a repository". 2. Pass the URL of your SVN repo. Lionel
On 26 Jun 2019, at 18:58, Spencer Graves <spencer.graves at prodsyse.com <mailto:spencer.graves at prodsyse.com>> wrote: ????? Thanks to Duncan, Lionel and Henrik for their quick replies. I have further questions: ??? ?? ???? 1.? Will GitHub automatically transfer the commits I made to R-Forge in the past couple of days? R-Forge is now at Rev. 420, and GitHub is still at 418. Will 419 and 420 be automatically mirrored onto "https://github.com/rforge/ecdat" sometime in the next 24 hours or so?? Is there something easy I can do to force that update? ??? ?? ???? 2.? Is there a way to make this GitHub version the master?? It currently says it is a 'Read-only mirror of "ecdat" from r-forge SVN.'? I can probably change "r-forge.r-project.org/projects/ecdat <http://r-forge.r-project.org/projects/ecdat>" so I'm the only one authorized to make changes there and then stop committing changes there.? However, before I do that, I'd want to make sure I can commit directly to the GitHub version, etc. ??? ?? ???? 3.? How can I make myself the owner and a contributor for the GitHub version?? I'm a "Project Admin" on the R-Forge version, but currently no one can make any changes to the GitHub version except via R-Forge.? There must be a recommended migration process. ????? I could create a separate version of this package on GitHub, but all the history would be lost. ????? Thanks again, ????? Spencer Graves On 2019-06-26 10:35, Lionel Henry wrote:
On 26 Jun 2019, at 17:25, Duncan Murdoch <murdoch.duncan at gmail.com <mailto:murdoch.duncan at gmail.com>> wrote: R-Forge is mirrored on Github; see https://github.com/rforge/ecdat, for example. ?That shows 418 commits in its history; presumably that's the full R-forge history. ?I think that's newer than Michael Friendly's gist. So I suspect (but haven't tried to do this) that migration now is as simple as doing a Github fork to your own Github account, and then basically forgetting about the R-forge stuff, or deleting it (and I don't know how to do that).
I think it's better to avoid the Fork button in this case, because forks are treated specially in the Github UI. In this case you'll want your repo to appear as a main repo, and not a fork. AFAIK the only way to unfork a repo is to ask the Github staff to do it. So instead of forking, use the "+" button on github.com <http://github.com> and select "Import a repository". This supports both git and svn repos. Best, Lionel
Whereas it is true that one has to contact GitHub to detach a GitHub repository, it really is no problem (or at least was no problem in 2016). I wanted to do so when I took over the maintainer role of LaplacesDemon which only remained on GitHub as a fork on some other person's private account. So I forked and then contacted GitHub support and simply asked them to remove the "forked form" reference on my new repository. They then quickly detached my repository. As you can see, the "forked from" is gone: https://github.com/LaplacesDemonR/LaplacesDemon In their response to my request they used the phrasing "Fork is detached." which suggests that this is their preferred term for this step. Best, Henrik Am Mi., 26. Juni 2019 um 16:38 Uhr schrieb Lionel Henry <lionel at rstudio.com
:
On 26 Jun 2019, at 17:25, Duncan Murdoch <murdoch.duncan at gmail.com>
wrote:
R-Forge is mirrored on Github; see https://github.com/rforge/ecdat, for
example. That shows 418 commits in its history; presumably that's the full R-forge history. I think that's newer than Michael Friendly's gist.
So I suspect (but haven't tried to do this) that migration now is as
simple as doing a Github fork to your own Github account, and then basically forgetting about the R-forge stuff, or deleting it (and I don't know how to do that). I think it's better to avoid the Fork button in this case, because forks are treated specially in the Github UI. In this case you'll want your repo to appear as a main repo, and not a fork. AFAIK the only way to unfork a repo is to ask the Github staff to do it. So instead of forking, use the "+" button on github.com and select "Import a repository". This supports both git and svn repos. Best, Lionel
______________________________________________ R-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Dr. Henrik Singmann Assistant Professor, Department of Psychology University of Warwick, UK http://singmann.org [[alternative HTML version deleted]]
1 day later
Hi, Henrik Singmann et al.: ????? Thanks for the suggestions.? I tried again to pull "https://github.com/sbgraves237/Ecdat" from R-Forge, with the same "Error 500" as before.? Then I tried pulling from "https://github.com/rforge/ecdat", which seemed to work ... AND the copy I pulled was at the latest revisions I had posted to R-Forge (520), so that makes it easier going forward. ????? What do you suggest I do next?? I'm thinking of the following: ??? ??????? 1.? Clone a copy of "https://github.com/sbgraves237/Ecdat" to my local computer and confirm that it works. ??? ??????? 2.? Modify "https://r-forge.r-project.org/projects/ecdat/" to make me the only remaining project member, if I can. ??? ??????? 3.? Contact GitHub support and ask them if they can delete "https://github.com/rforge/ecdat", because it is an orphan with 0 contributors, and anyone who might want it should be referred to "https://github.com/sbgraves237/Ecdat". ???? ??????? 4.? Email all the previous project members on "https://r-forge.r-project.org/projects/ecdat/" to tell them what I've done, in case they want to do anything more with this in the future. ????? I believe I know how to do 1, 2, and 4, and I can probably figure out 3.? However, before I start on this, I felt a need to thank everyone who contributed to this thread and invite comments, especially if someone thinks I might be better off doing something different. ????? Spencer Graves
On 2019-06-26 16:34, Henrik Singmann wrote:
Whereas it is true that one has to contact GitHub to detach a GitHub repository, it really is no problem (or at least was no problem in 2016). I wanted to do so when I took over the maintainer role of LaplacesDemon which only remained on GitHub as a fork on some other person's private account. So I forked and then contacted GitHub?support?and simply asked them to remove the "forked form" reference on my new repository.?They then quickly detached my repository.?As you can see, the "forked from" is gone: https://github.com/LaplacesDemonR/LaplacesDemon In their response to my request they used the phrasing "Fork is detached." which suggests that this is their preferred term for this step. Best, Henrik Am Mi., 26. Juni 2019 um 16:38?Uhr schrieb Lionel Henry <lionel at rstudio.com <mailto:lionel at rstudio.com>>:
> On 26 Jun 2019, at 17:25, Duncan Murdoch
<murdoch.duncan at gmail.com <mailto:murdoch.duncan at gmail.com>> wrote:
>
> R-Forge is mirrored on Github; see
https://github.com/rforge/ecdat, for example.? That shows 418 commits in its history; presumably that's the full R-forge history.? I think that's newer than Michael Friendly's gist.
>
> So I suspect (but haven't tried to do this) that migration now
is as simple as doing a Github fork to your own Github account,
and then basically forgetting about the R-forge stuff, or deleting
it (and I don't know how to do that).
I think it's better to avoid the Fork button in this case, because
forks are
treated specially in the Github UI. In this case you'll want your
repo to
appear as a main repo, and not a fork. AFAIK the only way to
unfork a repo
is to ask the Github staff to do it.
So instead of forking, use the "+" button on github.com
<http://github.com> and select
"Import a repository". This supports both git and svn repos.
Best,
Lionel
______________________________________________
R-devel at r-project.org <mailto:R-devel at r-project.org> mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
--
Dr. Henrik Singmann
Assistant Professor, Department of Psychology
University of Warwick, UK
http://singmann.org
Re your point 3: Because you have managed to create a GitHub version of your repository that is not a fork of https://github.com/rforge/ecdat, but its own independent repository, contacting GitHub support might not be the right way forward. Note that https://github.com/rforge is simply a read-only mirror of the complete R-Forge repository (and at least to me it is unclear of whether GitHub itself or some independent party is responsible for it, but I would assume it is not GitHub). So the easiest way to change something in https://github.com/rforge/ecdat would be to make the corresponding change in your R-forge repository and wait until it propagates to GitHub. So either delete the R-forge repository or make a final commit replacing its content with a README pointing towards the new GitHub repo at https://github.com/sbgraves237/Ecdat. Together with emailing all previous project members this should ensure that interested party will know about the new place where your package is being developed/hosted. You might also want to add a new README to the new GitHub repository which replaces the current R-forge one and provides installation instructions. Best, Henrik Am Fr., 28. Juni 2019 um 06:01 Uhr schrieb Spencer Graves < spencer.graves at prodsyse.com>:
Hi, Henrik Singmann et al.:
Thanks for the suggestions. I tried again to pull
"https://github.com/sbgraves237/Ecdat"
<https://github.com/sbgraves237/Ecdat> from R-Forge, with the same "Error
500" as before. Then I tried pulling from
"https://github.com/rforge/ecdat" <https://github.com/rforge/ecdat>,
which seemed to work ... AND the copy I pulled was at the latest revisions
I had posted to R-Forge (520), so that makes it easier going forward.
What do you suggest I do next? I'm thinking of the following:
1. Clone a copy of "https://github.com/sbgraves237/Ecdat"
<https://github.com/sbgraves237/Ecdat> to my local computer and confirm
that it works.
2. Modify "https://r-forge.r-project.org/projects/ecdat/"
<https://r-forge.r-project.org/projects/ecdat/> to make me the only
remaining project member, if I can.
3. Contact GitHub support and ask them if they can delete
"https://github.com/rforge/ecdat" <https://github.com/rforge/ecdat>,
because it is an orphan with 0 contributors, and anyone who might want it
should be referred to "https://github.com/sbgraves237/Ecdat"
<https://github.com/sbgraves237/Ecdat>.
4. Email all the previous project members on
"https://r-forge.r-project.org/projects/ecdat/"
<https://r-forge.r-project.org/projects/ecdat/> to tell them what I've
done, in case they want to do anything more with this in the future.
I believe I know how to do 1, 2, and 4, and I can probably figure
out 3. However, before I start on this, I felt a need to thank everyone
who contributed to this thread and invite comments, especially if someone
thinks I might be better off doing something different.
Spencer Graves
On 2019-06-26 16:34, Henrik Singmann wrote:
Whereas it is true that one has to contact GitHub to detach a GitHub
repository, it really is no problem (or at least was no problem in 2016). I
wanted to do so when I took over the maintainer role of LaplacesDemon which
only remained on GitHub as a fork on some other person's private account.
So I forked and then contacted GitHub support and simply asked them to
remove the "forked form" reference on my new repository. They then quickly
detached my repository. As you can see, the "forked from" is gone:
https://github.com/LaplacesDemonR/LaplacesDemon
In their response to my request they used the phrasing "Fork is detached."
which suggests that this is their preferred term for this step.
Best,
Henrik
Am Mi., 26. Juni 2019 um 16:38 Uhr schrieb Lionel Henry <
lionel at rstudio.com>:
On 26 Jun 2019, at 17:25, Duncan Murdoch <murdoch.duncan at gmail.com>
wrote:
R-Forge is mirrored on Github; see https://github.com/rforge/ecdat,
for example. That shows 418 commits in its history; presumably that's the full R-forge history. I think that's newer than Michael Friendly's gist.
So I suspect (but haven't tried to do this) that migration now is as
simple as doing a Github fork to your own Github account, and then basically forgetting about the R-forge stuff, or deleting it (and I don't know how to do that). I think it's better to avoid the Fork button in this case, because forks are treated specially in the Github UI. In this case you'll want your repo to appear as a main repo, and not a fork. AFAIK the only way to unfork a repo is to ask the Github staff to do it. So instead of forking, use the "+" button on github.com and select "Import a repository". This supports both git and svn repos. Best, Lionel
______________________________________________ R-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
-- Dr. Henrik Singmann Assistant Professor, Department of Psychology University of Warwick, UK http://singmann.org
Dr. Henrik Singmann Assistant Professor, Department of Psychology University of Warwick, UK http://singmann.org [[alternative HTML version deleted]]
Henrik's advice is all good. I would say his idea of the final commit of a README pointer is better than deleting things at R-forge; there is likely old information out there somewhere pointing to R-forge as a location for Ecdat development, and any bug reports or discussion on R-forge will not have been copied over to Github. Duncan Murdoch
On 28/06/2019 4:14 a.m., Henrik Singmann wrote:
Re your point 3: Because you have managed to create a GitHub version of your repository that is not a fork of https://github.com/rforge/ecdat, but its own independent repository, contacting GitHub support might not be the right way forward. Note that https://github.com/rforge?is simply a read-only mirror of the complete R-Forge repository (and at least to me it is unclear of whether GitHub itself or some independent party is responsible for it, but I would assume it is not GitHub). So the easiest way to change something in https://github.com/rforge/ecdat?would be to make the corresponding change in your R-forge repository and wait until it propagates to GitHub. So either delete the R-forge repository or make a final commit replacing its content with a README pointing towards the new GitHub repo at https://github.com/sbgraves237/Ecdat. Together with emailing all previous project members this should ensure that interested party will know about the new place where your package is being developed/hosted. You might also want to add a new README to the new GitHub repository which replaces the current R-forge one and provides installation instructions. Best, Henrik Am Fr., 28. Juni 2019 um 06:01?Uhr schrieb Spencer Graves <spencer.graves at prodsyse.com <mailto:spencer.graves at prodsyse.com>>: Hi, Henrik Singmann et al.: ????? Thanks for the suggestions.? I tried again to pull "https://github.com/sbgraves237/Ecdat" <https://github.com/sbgraves237/Ecdat> from R-Forge, with the same "Error 500" as before.? Then I tried pulling from "https://github.com/rforge/ecdat" <https://github.com/rforge/ecdat>, which seemed to work ... AND the copy I pulled was at the latest revisions I had posted to R-Forge (520), so that makes it easier going forward. ????? What do you suggest I do next?? I'm thinking of the following: ??? ??????? 1.? Clone a copy of "https://github.com/sbgraves237/Ecdat" <https://github.com/sbgraves237/Ecdat> to my local computer and confirm that it works. ??? ??????? 2.? Modify "https://r-forge.r-project.org/projects/ecdat/" <https://r-forge.r-project.org/projects/ecdat/> to make me the only remaining project member, if I can. ??? ??????? 3.? Contact GitHub support and ask them if they can delete "https://github.com/rforge/ecdat" <https://github.com/rforge/ecdat>, because it is an orphan with 0 contributors, and anyone who might want it should be referred to "https://github.com/sbgraves237/Ecdat" <https://github.com/sbgraves237/Ecdat>. ???? ??????? 4.? Email all the previous project members on "https://r-forge.r-project.org/projects/ecdat/" <https://r-forge.r-project.org/projects/ecdat/> to tell them what I've done, in case they want to do anything more with this in the future. ????? I believe I know how to do 1, 2, and 4, and I can probably figure out 3.? However, before I start on this, I felt a need to thank everyone who contributed to this thread and invite comments, especially if someone thinks I might be better off doing something different. ????? Spencer Graves On 2019-06-26 16:34, Henrik Singmann wrote:
Whereas it is true that one has to contact GitHub to detach a
GitHub repository, it really is no problem (or at least was no
problem in 2016). I wanted to do so when I took over the
maintainer role of LaplacesDemon which only remained on GitHub as
a fork on some other person's private account. So I forked and
then contacted GitHub?support?and simply asked them to remove the
"forked form" reference on my new repository.?They then quickly
detached my repository.?As you can see, the "forked from" is gone:
https://github.com/LaplacesDemonR/LaplacesDemon
In their response to my request they used the phrasing "Fork is
detached." which suggests that this is their preferred term for
this step.
Best,
Henrik
Am Mi., 26. Juni 2019 um 16:38?Uhr schrieb Lionel Henry
<lionel at rstudio.com <mailto:lionel at rstudio.com>>:
> On 26 Jun 2019, at 17:25, Duncan Murdoch
<murdoch.duncan at gmail.com <mailto:murdoch.duncan at gmail.com>>
wrote:
>
> R-Forge is mirrored on Github; see
https://github.com/rforge/ecdat, for example.? That shows 418 commits in its history; presumably that's the full R-forge history.? I think that's newer than Michael Friendly's gist.
>
> So I suspect (but haven't tried to do this) that migration
now is as simple as doing a Github fork to your own Github
account, and then basically forgetting about the R-forge
stuff, or deleting it (and I don't know how to do that).
I think it's better to avoid the Fork button in this case,
because forks are
treated specially in the Github UI. In this case you'll want
your repo to
appear as a main repo, and not a fork. AFAIK the only way to
unfork a repo
is to ask the Github staff to do it.
So instead of forking, use the "+" button on github.com
<http://github.com> and select
"Import a repository". This supports both git and svn repos.
Best,
Lionel
______________________________________________
R-devel at r-project.org <mailto:R-devel at r-project.org> mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
--
Dr. Henrik Singmann
Assistant Professor, Department of Psychology
University of Warwick, UK
http://singmann.org
-- Dr. Henrik Singmann Assistant Professor, Department of Psychology University of Warwick, UK http://singmann.org
On Fri, Jun 28, 2019 at 6:01 AM Spencer Graves <spencer.graves at prodsyse.com> wrote: [...]
1. Clone a copy of "https://github.com/sbgraves237/Ecdat" to my local computer and confirm that it works.
I suggest you put each package in its own repository, because our R tooling (e.g. Travis CI, etc.) works best if you do that. This is quite easy to do nowadays: https://stackoverflow.com/a/17864475/604364
3. Contact GitHub support and ask them if they can delete "https://github.com/rforge/ecdat", because it is an orphan with 0 contributors, and anyone who might want it should be referred to "https://github.com/sbgraves237/Ecdat".
You don't need do that. It is unlikely that they would remove *someone else's* repository, anyway, unless the repository has some copyright or license problems. Which it does not, since your packages are GPL. GitHub as a company does not manage https://github.com/rforge. This read only mirror was set up by a fellow GitHub user, and it is best if it is kept as a read-only mirror. Instead, you can do as Duncan suggested, and put a README in your R-Forge repository, that points to *your* GitHub repositor(y/ies). Then the https://github.com/rforge/ecdat read only mirror will pick this up and will point there as well. Gabor [...]
Spencer, on your point 3. below, we took a different path in migrating
several packages.
After we migrated to github as the new master copy, we made new commits
to the now orphaned R-Forge copies to include a new .onAttach function
as so:
.onAttach <- function(libname, pkgname) {
repo <- "https://github.com/sbgraves237/Ecdat <https://github.com/braverock/quantstrat>"
packageStartupMessage(
"WARNING: this package was installed from R-Forge, but development has\n",
"moved to GitHub. Please re-install the package using the GitHub repo at:\n",
repo, ".")
}
And to update the README in the main pkg/ dir on R-Forge.
So all the old references in talks, papers, StackOverflow, whatever will
point to the R-Forge version, but the R-Forge version will point anyone
to github.
Regards,
Brian
On 6/28/19 12:00 AM, Spencer Graves wrote:
Hi, Henrik Singmann et al.: ????? Thanks for the suggestions.? I tried again to pull "https://github.com/sbgraves237/Ecdat" from R-Forge, with the same "Error 500" as before.? Then I tried pulling from "https://github.com/rforge/ecdat", which seemed to work ... AND the copy I pulled was at the latest revisions I had posted to R-Forge (520), so that makes it easier going forward. ????? What do you suggest I do next?? I'm thinking of the following: ??? ??????? 1.? Clone a copy of "https://github.com/sbgraves237/Ecdat" to my local computer and confirm that it works. ??? ??????? 2.? Modify "https://r-forge.r-project.org/projects/ecdat/" to make me the only remaining project member, if I can. ??? ??????? 3.? Contact GitHub support and ask them if they can delete "https://github.com/rforge/ecdat", because it is an orphan with 0 contributors, and anyone who might want it should be referred to "https://github.com/sbgraves237/Ecdat". ???? ??????? 4.? Email all the previous project members on "https://r-forge.r-project.org/projects/ecdat/" to tell them what I've done, in case they want to do anything more with this in the future. ????? I believe I know how to do 1, 2, and 4, and I can probably figure out 3.? However, before I start on this, I felt a need to thank everyone who contributed to this thread and invite comments, especially if someone thinks I might be better off doing something different. ????? Spencer Graves On 2019-06-26 16:34, Henrik Singmann wrote:
Whereas it is true that one has to contact GitHub to detach a GitHub repository, it really is no problem (or at least was no problem in 2016). I wanted to do so when I took over the maintainer role of LaplacesDemon which only remained on GitHub as a fork on some other person's private account. So I forked and then contacted GitHub?support?and simply asked them to remove the "forked form" reference on my new repository.?They then quickly detached my repository.?As you can see, the "forked from" is gone: https://github.com/LaplacesDemonR/LaplacesDemon In their response to my request they used the phrasing "Fork is detached." which suggests that this is their preferred term for this step. Best, Henrik Am Mi., 26. Juni 2019 um 16:38?Uhr schrieb Lionel Henry <lionel at rstudio.com <mailto:lionel at rstudio.com>>:
> On 26 Jun 2019, at 17:25, Duncan Murdoch
<murdoch.duncan at gmail.com <mailto:murdoch.duncan at gmail.com>> wrote:
>
> R-Forge is mirrored on Github; see
https://github.com/rforge/ecdat, for example.? That shows 418 commits in its history; presumably that's the full R-forge history.? I think that's newer than Michael Friendly's gist.
>
> So I suspect (but haven't tried to do this) that migration now
is as simple as doing a Github fork to your own Github account,
and then basically forgetting about the R-forge stuff, or deleting
it (and I don't know how to do that).
I think it's better to avoid the Fork button in this case, because
forks are
treated specially in the Github UI. In this case you'll want your
repo to
appear as a main repo, and not a fork. AFAIK the only way to
unfork a repo
is to ask the Github staff to do it.
So instead of forking, use the "+" button on github.com
<http://github.com> and select
"Import a repository". This supports both git and svn repos.
Best,
Lionel
______________________________________________
R-devel at r-project.org <mailto:R-devel at r-project.org> mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
--
Dr. Henrik Singmann
Assistant Professor, Department of Psychology
University of Warwick, UK
http://singmann.org
[[alternative HTML version deleted]]
______________________________________________ R-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Brian G. Peterson http://braverock.com/brian/ Ph: 773-459-4973 IM: bgpbraverock [[alternative HTML version deleted]]
On 28/06/2019 6:26 a.m., G?bor Cs?rdi wrote:
Instead, you can do as Duncan suggested, and put a README in your R-Forge repository, that points to *your* GitHub repositor(y/ies). Then the https://github.com/rforge/ecdat read only mirror will pick this up and will point there as well.
Just for the record: that was Henrik Singmann's suggestion, I just agreed with it. Duncan Murdoch
Thanks to Duncan, Henrik and Henrik, Brian, and G?bor: ????? I created a local copy of the new GitHub version using the following: git clone https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git ????? That worked in the sense that I got a local copy.? However, after I rolled the version number and did "git commit" on the DESCRIPTION files, my "git push" command generated the following: remote: Invalid username or password. fatal: Authentication failed for 'https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git/' ????? What am I missing?? [Note:? I used my actual GitHub password in place of "mypassword" here, and this "Authentication failed" message reported the GitHub password I used here.] ????? Thanks, ????? Spencer p.s.? I'm doing this under macOS Mojave 10.14.5.? Also,? I added ".onAttach" functions to the R-Forge versions as Brian G. Peterson suggested.? That seemed to work fine.
On 2019-06-28 07:13, Duncan Murdoch wrote:
On 28/06/2019 6:26 a.m., G?bor Cs?rdi wrote:
Instead, you can do as Duncan suggested, and put a README in your R-Forge repository, that points to *your* GitHub repositor(y/ies). Then the https://github.com/rforge/ecdat read only mirror will pick this up and will point there as well.
Just for the record:? that was Henrik Singmann's suggestion, I just agreed with it. Duncan Murdoch
Apparently your username/password are wrong. Can you clone/push from other repos? You do not need authorization when cloning a public repo, so even incorrect credentials may work (haven't tested this though). But for push you have to have that in order. I suggest you create ssh keys, upload those to GH, and use ssh authorization instead of https. Cheers, Ott On Fri, Jun 28, 2019 at 8:18 PM Spencer Graves <spencer.graves at prodsyse.com> wrote:
Thanks to Duncan, Henrik and Henrik, Brian, and G?bor:
I created a local copy of the new GitHub version using the
following:
git clone https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git
That worked in the sense that I got a local copy. However, after
I rolled the version number and did "git commit" on the DESCRIPTION
files, my "git push" command generated the following:
remote: Invalid username or password.
fatal: Authentication failed for
'https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git/'
What am I missing? [Note: I used my actual GitHub password in
place of "mypassword" here, and this "Authentication failed" message
reported the GitHub password I used here.]
Thanks,
Spencer
p.s. I'm doing this under macOS Mojave 10.14.5. Also, I added
".onAttach" functions to the R-Forge versions as Brian G. Peterson
suggested. That seemed to work fine.
On 2019-06-28 07:13, Duncan Murdoch wrote:
On 28/06/2019 6:26 a.m., G?bor Cs?rdi wrote:
Instead, you can do as Duncan suggested, and put a README in your R-Forge repository, that points to *your* GitHub repositor(y/ies). Then the https://github.com/rforge/ecdat read only mirror will pick this up and will point there as well.
Just for the record: that was Henrik Singmann's suggestion, I just agreed with it. Duncan Murdoch
[[alternative HTML version deleted]]
______________________________________________ R-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Hi, Ott et al.: ????? What's the best way to get "Travis CI" to build and test the two packages, Ecdat and Ecfun, that have long been combined in the Ecdat project? ????? Following Ott's advice and studying studying Wickham's "R Packages" (http://r-pkgs.had.co.nz/), I was able to configure RStudio so it would sync using git with "GitHub.com/sbgraves237/Ecdat".? However, when I tried to configure "Travis CI", it said, "No DESCRIPTION file found, user must supply their own install and script steps". ??? ? Earlier in this thread, I think someone suggested I make the Ecdat and Ecfun packages separate projects on GitHub (though I can't find that suggestion now).? This would not be an issue if it were all local without version control.? With RStudio managing my interface with GitHub, it now seems quite tricky. ????? Suggestions? ????? Thanks again to all who have offered suggestions so far.? This migration from R-Forge to GitHub seems complete except for the automatic tests provided via "Travis CI". ????? Spencer
On 2019-06-28 22:25, Ott Toomet wrote:
Apparently your username/password are wrong.? Can you clone/push from
other repos?
You do not need authorization when cloning a public repo, so even
incorrect credentials may work (haven't tested this though).? But for
push you have to have that in order.
I suggest you create ssh keys, upload those to GH, and use ssh
authorization instead of https.
Cheers,
Ott
On Fri, Jun 28, 2019 at 8:18 PM Spencer Graves
<spencer.graves at prodsyse.com <mailto:spencer.graves at prodsyse.com>> wrote:
Thanks to Duncan, Henrik and Henrik, Brian, and G?bor:
?????? I created a local copy of the new GitHub version using the
following:
git clone
https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git
?????? That worked in the sense that I got a local copy. However,
after
I rolled the version number and did "git commit" on the DESCRIPTION
files, my "git push" command generated the following:
remote: Invalid username or password.
fatal: Authentication failed for
'https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git/'
?????? What am I missing?? [Note:? I used my actual GitHub
password in
place of "mypassword" here, and this "Authentication failed" message
reported the GitHub password I used here.]
?????? Thanks,
?????? Spencer
p.s.? I'm doing this under macOS Mojave 10.14.5.? Also,? I added
".onAttach" functions to the R-Forge versions as Brian G. Peterson
suggested.? That seemed to work fine.
On 2019-06-28 07:13, Duncan Murdoch wrote:
> On 28/06/2019 6:26 a.m., G?bor Cs?rdi wrote:
>
>> Instead, you can do as Duncan suggested, and put a README in your
>> R-Forge
>> repository, that points to *your* GitHub repositor(y/ies). Then the
>> https://github.com/rforge/ecdat read only mirror will pick this up
>> and will
>> point there as well.
>
> Just for the record:? that was Henrik Singmann's suggestion, I just
> agreed with it.
>
> Duncan Murdoch
>
? ? ? ? [[alternative HTML version deleted]]
______________________________________________
R-devel at r-project.org <mailto:R-devel at r-project.org> mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
On Sat, Jun 29, 2019 at 9:43 AM Spencer Graves
<spencer.graves at prodsyse.com> wrote:
Hi, Ott et al.:
What's the best way to get "Travis CI" to build and test the two
packages, Ecdat and Ecfun, that have long been combined in the Ecdat
project?
Following Ott's advice and studying studying Wickham's "R
Packages" (http://r-pkgs.had.co.nz/), I was able to configure RStudio so
it would sync using git with "GitHub.com/sbgraves237/Ecdat". However,
when I tried to configure "Travis CI", it said, "No DESCRIPTION file
found, user must supply their own install and script steps".
Earlier in this thread, I think someone suggested I make the
Ecdat and Ecfun packages separate projects on GitHub (though I can't
find that suggestion now). This would not be an issue if it were all
local without version control. With RStudio managing my interface with
GitHub, it now seems quite tricky.
I'm 99.999% confident that your life will be much much easier if you keep one R package per repository. If you don't, you'll probably be very lonely when it comes to tools etc. There are built-in 'git' commands, but also git utility tools, for extracting a subset of folders/files from git repository into new git repositories. You'll still preserve the commit history. I would deal with this in the terminal, using the 'git' client and possible some extraction tool. Also, while you spend time on this, have a look at the commit authorship that I mentioned previously. It's nice to have that in place later. After you got the above in place, then .travis.yml and appveyor.yml is pretty straightforward (might even be a copy'n'paste). Finally, I saw you put your credentials in the URL when you cloned. I don't think that's safe, your GitHub credentials will be stored in the ./.git/config file. Instead, just clone with: git clone https://github.com/sbgraves237/Ecdat.git You can then configure git to cache your HTTPS credentials for a certain time, e.g. 120 minutes, so you don't have to enter them each time you pull/push. See https://git-scm.com/docs/git-credential-cache for details. That's what I tell new-comers to Git(Hub|Lab|...) to use. Personally, I add my public SSH key to GitHub and then clone with the ssh protocol: git clone git at github.com:sbgraves237/Ecdat.git That way my I never have to worry entering my credentials. /Henrik
Suggestions?
Thanks again to all who have offered suggestions so far. This
migration from R-Forge to GitHub seems complete except for the automatic
tests provided via "Travis CI".
Spencer
On 2019-06-28 22:25, Ott Toomet wrote:
Apparently your username/password are wrong. Can you clone/push from
other repos?
You do not need authorization when cloning a public repo, so even
incorrect credentials may work (haven't tested this though). But for
push you have to have that in order.
I suggest you create ssh keys, upload those to GH, and use ssh
authorization instead of https.
Cheers,
Ott
On Fri, Jun 28, 2019 at 8:18 PM Spencer Graves
<spencer.graves at prodsyse.com <mailto:spencer.graves at prodsyse.com>> wrote:
Thanks to Duncan, Henrik and Henrik, Brian, and G?bor:
I created a local copy of the new GitHub version using the
following:
git clone
https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git
That worked in the sense that I got a local copy. However,
after
I rolled the version number and did "git commit" on the DESCRIPTION
files, my "git push" command generated the following:
remote: Invalid username or password.
fatal: Authentication failed for
'https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git/'
What am I missing? [Note: I used my actual GitHub
password in
place of "mypassword" here, and this "Authentication failed" message
reported the GitHub password I used here.]
Thanks,
Spencer
p.s. I'm doing this under macOS Mojave 10.14.5. Also, I added
".onAttach" functions to the R-Forge versions as Brian G. Peterson
suggested. That seemed to work fine.
On 2019-06-28 07:13, Duncan Murdoch wrote:
> On 28/06/2019 6:26 a.m., G?bor Cs?rdi wrote:
>
>> Instead, you can do as Duncan suggested, and put a README in your
>> R-Forge
>> repository, that points to *your* GitHub repositor(y/ies). Then the
>> https://github.com/rforge/ecdat read only mirror will pick this up
>> and will
>> point there as well.
>
> Just for the record: that was Henrik Singmann's suggestion, I just
> agreed with it.
>
> Duncan Murdoch
>
[[alternative HTML version deleted]]
______________________________________________
R-devel at r-project.org <mailto:R-devel at r-project.org> mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
[[alternative HTML version deleted]]
______________________________________________ R-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Hi, Henrik et al.: ????? What's your favorite documentation on how to make two GitHub projects from one containing two packages? ????? Currently, "github.com/sbgraves237/Ecdat" consists primarily of a directory "pkg" with subdirectories "Ecdat" and "Ecfun" containing the two packages.? I need to know how to do the following: ??? ??????? 1.? Extract "github.com/sbgraves237/Ecdat/pkg/Ecfun" to create? "github.com/sbgraves237/Ecfun". ???? ??????? 2.? Elevate "github.com/sbgraves237/Ecdat/pkg/Ecdat" to "github.com/sbgraves237/Ecdat", discarding the other files in the original "github.com/sbgraves237/Ecdat/". ????? This sounds like it could be accomplished relatively easily by someone with sufficient understanding of "git" and GitHub.? I could use suggestions on how to do this -- or at least on how to find documentation on how to do this. ????? Thanks, ????? Spencer
On 2019-06-29 14:09, Henrik Bengtsson wrote:
On Sat, Jun 29, 2019 at 9:43 AM Spencer Graves <spencer.graves at prodsyse.com> wrote:
Hi, Ott et al.:
What's the best way to get "Travis CI" to build and test the two
packages, Ecdat and Ecfun, that have long been combined in the Ecdat
project?
Following Ott's advice and studying studying Wickham's "R
Packages" (http://r-pkgs.had.co.nz/), I was able to configure RStudio so
it would sync using git with "GitHub.com/sbgraves237/Ecdat". However,
when I tried to configure "Travis CI", it said, "No DESCRIPTION file
found, user must supply their own install and script steps".
Earlier in this thread, I think someone suggested I make the
Ecdat and Ecfun packages separate projects on GitHub (though I can't
find that suggestion now). This would not be an issue if it were all
local without version control. With RStudio managing my interface with
GitHub, it now seems quite tricky.
I'm 99.999% confident that your life will be much much easier if you keep one R package per repository. If you don't, you'll probably be very lonely when it comes to tools etc. There are built-in 'git' commands, but also git utility tools, for extracting a subset of folders/files from git repository into new git repositories. You'll still preserve the commit history. I would deal with this in the terminal, using the 'git' client and possible some extraction tool. Also, while you spend time on this, have a look at the commit authorship that I mentioned previously. It's nice to have that in place later. After you got the above in place, then .travis.yml and appveyor.yml is pretty straightforward (might even be a copy'n'paste). Finally, I saw you put your credentials in the URL when you cloned. I don't think that's safe, your GitHub credentials will be stored in the ./.git/config file. Instead, just clone with: git clone https://github.com/sbgraves237/Ecdat.git You can then configure git to cache your HTTPS credentials for a certain time, e.g. 120 minutes, so you don't have to enter them each time you pull/push. See https://git-scm.com/docs/git-credential-cache for details. That's what I tell new-comers to Git(Hub|Lab|...) to use. Personally, I add my public SSH key to GitHub and then clone with the ssh protocol: git clone git at github.com:sbgraves237/Ecdat.git That way my I never have to worry entering my credentials. /Henrik
Suggestions?
Thanks again to all who have offered suggestions so far. This
migration from R-Forge to GitHub seems complete except for the automatic
tests provided via "Travis CI".
Spencer
On 2019-06-28 22:25, Ott Toomet wrote:
Apparently your username/password are wrong. Can you clone/push from
other repos?
You do not need authorization when cloning a public repo, so even
incorrect credentials may work (haven't tested this though). But for
push you have to have that in order.
I suggest you create ssh keys, upload those to GH, and use ssh
authorization instead of https.
Cheers,
Ott
On Fri, Jun 28, 2019 at 8:18 PM Spencer Graves
<spencer.graves at prodsyse.com <mailto:spencer.graves at prodsyse.com>> wrote:
Thanks to Duncan, Henrik and Henrik, Brian, and G?bor:
I created a local copy of the new GitHub version using the
following:
git clone
https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git
That worked in the sense that I got a local copy. However,
after
I rolled the version number and did "git commit" on the DESCRIPTION
files, my "git push" command generated the following:
remote: Invalid username or password.
fatal: Authentication failed for
'https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git/'
What am I missing? [Note: I used my actual GitHub
password in
place of "mypassword" here, and this "Authentication failed" message
reported the GitHub password I used here.]
Thanks,
Spencer
p.s. I'm doing this under macOS Mojave 10.14.5. Also, I added
".onAttach" functions to the R-Forge versions as Brian G. Peterson
suggested. That seemed to work fine.
On 2019-06-28 07:13, Duncan Murdoch wrote:
> On 28/06/2019 6:26 a.m., G?bor Cs?rdi wrote:
>
>> Instead, you can do as Duncan suggested, and put a README in your
>> R-Forge
>> repository, that points to *your* GitHub repositor(y/ies). Then the
>> https://github.com/rforge/ecdat read only mirror will pick this up
>> and will
>> point there as well.
>
> Just for the record: that was Henrik Singmann's suggestion, I just
> agreed with it.
>
> Duncan Murdoch
>
[[alternative HTML version deleted]]
______________________________________________
R-devel at r-project.org <mailto:R-devel at r-project.org> mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
[[alternative HTML version deleted]]
______________________________________________ R-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
On Sat, Jun 29, 2019 at 6:06 PM Spencer Graves
<spencer.graves at prodsyse.com> wrote:
Hi, Henrik et al.:
What's your favorite documentation on how to make two GitHub
projects from one containing two packages?
Currently, "github.com/sbgraves237/Ecdat" consists primarily of a
directory "pkg" with subdirectories "Ecdat" and "Ecfun" containing the
two packages. I need to know how to do the following:
1. Extract "github.com/sbgraves237/Ecdat/pkg/Ecfun" to
create "github.com/sbgraves237/Ecfun".
2. Elevate "github.com/sbgraves237/Ecdat/pkg/Ecdat" to
"github.com/sbgraves237/Ecdat", discarding the other files in the
original "github.com/sbgraves237/Ecdat/".
This sounds like it could be accomplished relatively easily by
someone with sufficient understanding of "git" and GitHub. I could use
suggestions on how to do this -- or at least on how to find
documentation on how to do this.
This is straightforward if the two packages have always been in the same directory structure. But it doesn't look like that's the case for your repository, since Ecfun was added around r125. So Ecdat's history is split and would need to be grafted together. I've done this for other packages. So it's possible, but it took me some trial and error. I'm giving that a go right now. I'll report back tomorrow morning, at the latest.
Thanks,
Spencer
On 2019-06-29 14:09, Henrik Bengtsson wrote:
On Sat, Jun 29, 2019 at 9:43 AM Spencer Graves <spencer.graves at prodsyse.com> wrote:
Hi, Ott et al.:
What's the best way to get "Travis CI" to build and test the two
packages, Ecdat and Ecfun, that have long been combined in the Ecdat
project?
Following Ott's advice and studying studying Wickham's "R
Packages" (http://r-pkgs.had.co.nz/), I was able to configure RStudio so
it would sync using git with "GitHub.com/sbgraves237/Ecdat". However,
when I tried to configure "Travis CI", it said, "No DESCRIPTION file
found, user must supply their own install and script steps".
Earlier in this thread, I think someone suggested I make the
Ecdat and Ecfun packages separate projects on GitHub (though I can't
find that suggestion now). This would not be an issue if it were all
local without version control. With RStudio managing my interface with
GitHub, it now seems quite tricky.
I'm 99.999% confident that your life will be much much easier if you keep one R package per repository. If you don't, you'll probably be very lonely when it comes to tools etc. There are built-in 'git' commands, but also git utility tools, for extracting a subset of folders/files from git repository into new git repositories. You'll still preserve the commit history. I would deal with this in the terminal, using the 'git' client and possible some extraction tool. Also, while you spend time on this, have a look at the commit authorship that I mentioned previously. It's nice to have that in place later. After you got the above in place, then .travis.yml and appveyor.yml is pretty straightforward (might even be a copy'n'paste). Finally, I saw you put your credentials in the URL when you cloned. I don't think that's safe, your GitHub credentials will be stored in the ./.git/config file. Instead, just clone with: git clone https://github.com/sbgraves237/Ecdat.git You can then configure git to cache your HTTPS credentials for a certain time, e.g. 120 minutes, so you don't have to enter them each time you pull/push. See https://git-scm.com/docs/git-credential-cache for details. That's what I tell new-comers to Git(Hub|Lab|...) to use. Personally, I add my public SSH key to GitHub and then clone with the ssh protocol: git clone git at github.com:sbgraves237/Ecdat.git That way my I never have to worry entering my credentials. /Henrik
Suggestions?
Thanks again to all who have offered suggestions so far. This
migration from R-Forge to GitHub seems complete except for the automatic
tests provided via "Travis CI".
Spencer
On 2019-06-28 22:25, Ott Toomet wrote:
Apparently your username/password are wrong. Can you clone/push from
other repos?
You do not need authorization when cloning a public repo, so even
incorrect credentials may work (haven't tested this though). But for
push you have to have that in order.
I suggest you create ssh keys, upload those to GH, and use ssh
authorization instead of https.
Cheers,
Ott
On Fri, Jun 28, 2019 at 8:18 PM Spencer Graves
<spencer.graves at prodsyse.com <mailto:spencer.graves at prodsyse.com>> wrote:
Thanks to Duncan, Henrik and Henrik, Brian, and G?bor:
I created a local copy of the new GitHub version using the
following:
git clone
https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git
That worked in the sense that I got a local copy. However,
after
I rolled the version number and did "git commit" on the DESCRIPTION
files, my "git push" command generated the following:
remote: Invalid username or password.
fatal: Authentication failed for
'https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git/'
What am I missing? [Note: I used my actual GitHub
password in
place of "mypassword" here, and this "Authentication failed" message
reported the GitHub password I used here.]
Thanks,
Spencer
p.s. I'm doing this under macOS Mojave 10.14.5. Also, I added
".onAttach" functions to the R-Forge versions as Brian G. Peterson
suggested. That seemed to work fine.
On 2019-06-28 07:13, Duncan Murdoch wrote:
> On 28/06/2019 6:26 a.m., G?bor Cs?rdi wrote:
>
>> Instead, you can do as Duncan suggested, and put a README in your
>> R-Forge
>> repository, that points to *your* GitHub repositor(y/ies). Then the
>> https://github.com/rforge/ecdat read only mirror will pick this up
>> and will
>> point there as well.
>
> Just for the record: that was Henrik Singmann's suggestion, I just
> agreed with it.
>
> Duncan Murdoch
>
[[alternative HTML version deleted]]
______________________________________________
R-devel at r-project.org <mailto:R-devel at r-project.org> mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
[[alternative HTML version deleted]]
______________________________________________ R-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
______________________________________________ R-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Joshua Ulrich | about.me/joshuaulrich FOSS Trading | www.fosstrading.com
On Sat, Jun 29, 2019 at 9:46 PM Joshua Ulrich <josh.m.ulrich at gmail.com> wrote:
On Sat, Jun 29, 2019 at 6:06 PM Spencer Graves <spencer.graves at prodsyse.com> wrote:
Hi, Henrik et al.:
What's your favorite documentation on how to make two GitHub
projects from one containing two packages?
Currently, "github.com/sbgraves237/Ecdat" consists primarily of a
directory "pkg" with subdirectories "Ecdat" and "Ecfun" containing the
two packages. I need to know how to do the following:
1. Extract "github.com/sbgraves237/Ecdat/pkg/Ecfun" to
create "github.com/sbgraves237/Ecfun".
2. Elevate "github.com/sbgraves237/Ecdat/pkg/Ecdat" to
"github.com/sbgraves237/Ecdat", discarding the other files in the
original "github.com/sbgraves237/Ecdat/".
This sounds like it could be accomplished relatively easily by
someone with sufficient understanding of "git" and GitHub. I could use
suggestions on how to do this -- or at least on how to find
documentation on how to do this.
This is straightforward if the two packages have always been in the same directory structure. But it doesn't look like that's the case for your repository, since Ecfun was added around r125. So Ecdat's history is split and would need to be grafted together. I've done this for other packages. So it's possible, but it took me some trial and error. I'm giving that a go right now. I'll report back tomorrow morning, at the latest.
I imported both packages into separate repositories: https://github.com/joshuaulrich/tmp-ecdat https://github.com/joshuaulrich/tmp-ecfun I changed your email address on your R-Forge commits to match your GitHub email address, so R-Forge commits would be associated with your GitHub account. I also omitted the "move" commit from Ecdat, and the "obsolete > GitHub" commits from both packages. I've attached a file with the commands I used, if anyone is interested. You can use my repos by cloning them to your local machine, adding your repos as new remotes, and pushing to them. You would need to run these commands (untested): ### clone my GitHub repo to your machine git clone git at github.com:joshuaulrich/tmp-ecfun.git Ecdat cd Ecdat ### rename my GitHub repo remote from 'origin' to 'tmp' git remote rename origin tmp ### add your GitHub repo remote as 'origin' ### NOTE: this should be a new, clean repo. ### Rename your existing 'Ecdat' so you don't overwrite it git remote add origin https://github.com/sbgraves237/Ecdat ### push to your GitHub repo git push -u origin master Then you need to run similar commands for Ecfun. Best, Josh
Thanks,
Spencer
On 2019-06-29 14:09, Henrik Bengtsson wrote:
On Sat, Jun 29, 2019 at 9:43 AM Spencer Graves <spencer.graves at prodsyse.com> wrote:
Hi, Ott et al.:
What's the best way to get "Travis CI" to build and test the two
packages, Ecdat and Ecfun, that have long been combined in the Ecdat
project?
Following Ott's advice and studying studying Wickham's "R
Packages" (http://r-pkgs.had.co.nz/), I was able to configure RStudio so
it would sync using git with "GitHub.com/sbgraves237/Ecdat". However,
when I tried to configure "Travis CI", it said, "No DESCRIPTION file
found, user must supply their own install and script steps".
Earlier in this thread, I think someone suggested I make the
Ecdat and Ecfun packages separate projects on GitHub (though I can't
find that suggestion now). This would not be an issue if it were all
local without version control. With RStudio managing my interface with
GitHub, it now seems quite tricky.
I'm 99.999% confident that your life will be much much easier if you keep one R package per repository. If you don't, you'll probably be very lonely when it comes to tools etc. There are built-in 'git' commands, but also git utility tools, for extracting a subset of folders/files from git repository into new git repositories. You'll still preserve the commit history. I would deal with this in the terminal, using the 'git' client and possible some extraction tool. Also, while you spend time on this, have a look at the commit authorship that I mentioned previously. It's nice to have that in place later. After you got the above in place, then .travis.yml and appveyor.yml is pretty straightforward (might even be a copy'n'paste). Finally, I saw you put your credentials in the URL when you cloned. I don't think that's safe, your GitHub credentials will be stored in the ./.git/config file. Instead, just clone with: git clone https://github.com/sbgraves237/Ecdat.git You can then configure git to cache your HTTPS credentials for a certain time, e.g. 120 minutes, so you don't have to enter them each time you pull/push. See https://git-scm.com/docs/git-credential-cache for details. That's what I tell new-comers to Git(Hub|Lab|...) to use. Personally, I add my public SSH key to GitHub and then clone with the ssh protocol: git clone git at github.com:sbgraves237/Ecdat.git That way my I never have to worry entering my credentials. /Henrik
Suggestions?
Thanks again to all who have offered suggestions so far. This
migration from R-Forge to GitHub seems complete except for the automatic
tests provided via "Travis CI".
Spencer
On 2019-06-28 22:25, Ott Toomet wrote:
Apparently your username/password are wrong. Can you clone/push from
other repos?
You do not need authorization when cloning a public repo, so even
incorrect credentials may work (haven't tested this though). But for
push you have to have that in order.
I suggest you create ssh keys, upload those to GH, and use ssh
authorization instead of https.
Cheers,
Ott
On Fri, Jun 28, 2019 at 8:18 PM Spencer Graves
<spencer.graves at prodsyse.com <mailto:spencer.graves at prodsyse.com>> wrote:
Thanks to Duncan, Henrik and Henrik, Brian, and G?bor:
I created a local copy of the new GitHub version using the
following:
git clone
https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git
That worked in the sense that I got a local copy. However,
after
I rolled the version number and did "git commit" on the DESCRIPTION
files, my "git push" command generated the following:
remote: Invalid username or password.
fatal: Authentication failed for
'https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git/'
What am I missing? [Note: I used my actual GitHub
password in
place of "mypassword" here, and this "Authentication failed" message
reported the GitHub password I used here.]
Thanks,
Spencer
p.s. I'm doing this under macOS Mojave 10.14.5. Also, I added
".onAttach" functions to the R-Forge versions as Brian G. Peterson
suggested. That seemed to work fine.
On 2019-06-28 07:13, Duncan Murdoch wrote:
> On 28/06/2019 6:26 a.m., G?bor Cs?rdi wrote:
>
>> Instead, you can do as Duncan suggested, and put a README in your
>> R-Forge
>> repository, that points to *your* GitHub repositor(y/ies). Then the
>> https://github.com/rforge/ecdat read only mirror will pick this up
>> and will
>> point there as well.
>
> Just for the record: that was Henrik Singmann's suggestion, I just
> agreed with it.
>
> Duncan Murdoch
>
[[alternative HTML version deleted]]
______________________________________________
R-devel at r-project.org <mailto:R-devel at r-project.org> mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
[[alternative HTML version deleted]]
______________________________________________ R-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
______________________________________________ R-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
-- Joshua Ulrich | about.me/joshuaulrich FOSS Trading | www.fosstrading.com
Joshua Ulrich | about.me/joshuaulrich FOSS Trading | www.fosstrading.com -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: ecdat_ecfun_migration.txt URL: <https://stat.ethz.ch/pipermail/r-devel/attachments/20190630/702d1c4d/attachment.txt>
On 2019-06-30 06:58, Joshua Ulrich wrote:
<snip>
I imported both packages into separate repositories: https://github.com/joshuaulrich/tmp-ecdat https://github.com/joshuaulrich/tmp-ecfun I changed your email address on your R-Forge commits to match your GitHub email address, so R-Forge commits would be associated with your GitHub account. I also omitted the "move" commit from Ecdat, and the "obsolete > GitHub" commits from both packages. I've attached a file with the commands I used, if anyone is interested. You can use my repos by cloning them to your local machine, adding your repos as new remotes, and pushing to them. You would need to run these commands (untested): ### clone my GitHub repo to your machine git clone git at github.com:joshuaulrich/tmp-ecfun.git Ecdat
Thanks so much.? Sadly, I'm still having troubles.? This "git clone ..." generates: Enter passphrase for key '/Users/sbgraves/.ssh/id_rsa': ????? Sadly, I don't know the passphrase it's looking for here, and I don't know how to find what it's looking for.? Under GitHub > Settings > "SSH and GPG keys", I see an SSH key dated two days ago, when I cloned Ecdat from within RStudio.? And in "~.ssh" I see files id_rsa and id_rsa.pub, both created two days ago. ????? What do you suggest I try to get past this? ????? Thanks again for all your help. ????? Spencer Graves
cd Ecdat ### rename my GitHub repo remote from 'origin' to 'tmp' git remote rename origin tmp ### add your GitHub repo remote as 'origin' ### NOTE: this should be a new, clean repo. ### Rename your existing 'Ecdat' so you don't overwrite it git remote add origin https://github.com/sbgraves237/Ecdat ### push to your GitHub repo git push -u origin master Then you need to run similar commands for Ecfun. Best, Josh
Thanks,
Spencer
On 2019-06-29 14:09, Henrik Bengtsson wrote:
On Sat, Jun 29, 2019 at 9:43 AM Spencer Graves <spencer.graves at prodsyse.com> wrote:
Hi, Ott et al.:
What's the best way to get "Travis CI" to build and test the two
packages, Ecdat and Ecfun, that have long been combined in the Ecdat
project?
Following Ott's advice and studying studying Wickham's "R
Packages" (http://r-pkgs.had.co.nz/), I was able to configure RStudio so
it would sync using git with "GitHub.com/sbgraves237/Ecdat". However,
when I tried to configure "Travis CI", it said, "No DESCRIPTION file
found, user must supply their own install and script steps".
Earlier in this thread, I think someone suggested I make the
Ecdat and Ecfun packages separate projects on GitHub (though I can't
find that suggestion now). This would not be an issue if it were all
local without version control. With RStudio managing my interface with
GitHub, it now seems quite tricky.
I'm 99.999% confident that your life will be much much easier if you keep one R package per repository. If you don't, you'll probably be very lonely when it comes to tools etc. There are built-in 'git' commands, but also git utility tools, for extracting a subset of folders/files from git repository into new git repositories. You'll still preserve the commit history. I would deal with this in the terminal, using the 'git' client and possible some extraction tool. Also, while you spend time on this, have a look at the commit authorship that I mentioned previously. It's nice to have that in place later. After you got the above in place, then .travis.yml and appveyor.yml is pretty straightforward (might even be a copy'n'paste). Finally, I saw you put your credentials in the URL when you cloned. I don't think that's safe, your GitHub credentials will be stored in the ./.git/config file. Instead, just clone with: git clone https://github.com/sbgraves237/Ecdat.git You can then configure git to cache your HTTPS credentials for a certain time, e.g. 120 minutes, so you don't have to enter them each time you pull/push. See https://git-scm.com/docs/git-credential-cache for details. That's what I tell new-comers to Git(Hub|Lab|...) to use. Personally, I add my public SSH key to GitHub and then clone with the ssh protocol: git clone git at github.com:sbgraves237/Ecdat.git That way my I never have to worry entering my credentials. /Henrik
Suggestions?
Thanks again to all who have offered suggestions so far. This
migration from R-Forge to GitHub seems complete except for the automatic
tests provided via "Travis CI".
Spencer
On 2019-06-28 22:25, Ott Toomet wrote:
Apparently your username/password are wrong. Can you clone/push from
other repos?
You do not need authorization when cloning a public repo, so even
incorrect credentials may work (haven't tested this though). But for
push you have to have that in order.
I suggest you create ssh keys, upload those to GH, and use ssh
authorization instead of https.
Cheers,
Ott
On Fri, Jun 28, 2019 at 8:18 PM Spencer Graves
<spencer.graves at prodsyse.com <mailto:spencer.graves at prodsyse.com>> wrote:
Thanks to Duncan, Henrik and Henrik, Brian, and G?bor:
I created a local copy of the new GitHub version using the
following:
git clone
https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git
That worked in the sense that I got a local copy. However,
after
I rolled the version number and did "git commit" on the DESCRIPTION
files, my "git push" command generated the following:
remote: Invalid username or password.
fatal: Authentication failed for
'https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git/'
What am I missing? [Note: I used my actual GitHub
password in
place of "mypassword" here, and this "Authentication failed" message
reported the GitHub password I used here.]
Thanks,
Spencer
p.s. I'm doing this under macOS Mojave 10.14.5. Also, I added
".onAttach" functions to the R-Forge versions as Brian G. Peterson
suggested. That seemed to work fine.
On 2019-06-28 07:13, Duncan Murdoch wrote:
> On 28/06/2019 6:26 a.m., G?bor Cs?rdi wrote:
>
>> Instead, you can do as Duncan suggested, and put a README in your
>> R-Forge
>> repository, that points to *your* GitHub repositor(y/ies). Then the
>> https://github.com/rforge/ecdat read only mirror will pick this up
>> and will
>> point there as well.
>
> Just for the record: that was Henrik Singmann's suggestion, I just
> agreed with it.
>
> Duncan Murdoch
>
[[alternative HTML version deleted]]
______________________________________________
R-devel at r-project.org <mailto:R-devel at r-project.org> mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
[[alternative HTML version deleted]]
______________________________________________ R-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
______________________________________________ R-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
-- Joshua Ulrich | about.me/joshuaulrich FOSS Trading | www.fosstrading.com
Apparently you created id_rsa key pair with a passphrase. Passphrase is like an additional password protection layer on your ssh key. I don't know how did you create it. But you can always create a new one (you should delete the old one before you create a new one) using the shell command 'ssh-keygen'. It asks for a passphrase, just push enter for an empty passphrase (twice). You also have to update the ssh public key (id_rsa.pub) on github by supplying the new public key (id_rsa.pub). There are some implications you should be aware of: * if you delete id_rsa*, you cannot use any ssh authorization that relies on this key any more (that's why you have to update on GH). From the what you write (... created 2 days ago) I guess you do not use these keys elsewhere but I may be wrong. * if you supply empty passphrase, you bypass the optional extra security layer. I think this is OK for open source software development on your personal computer but your preferences/situation may differ. * You cannot use the same keys with passphrase if they are created without one. This is likely not an issue, but if it turns out to be a problem, you can either add passphrase to the default keys, or create another set of keys, passphrase protected. Cheers, Ott On Sun, Jun 30, 2019 at 9:51 PM Spencer Graves <spencer.graves at prodsyse.com> wrote:
On 2019-06-30 06:58, Joshua Ulrich wrote: <snip>
I imported both packages into separate repositories: https://github.com/joshuaulrich/tmp-ecdat https://github.com/joshuaulrich/tmp-ecfun I changed your email address on your R-Forge commits to match your GitHub email address, so R-Forge commits would be associated with your GitHub account. I also omitted the "move" commit from Ecdat, and the "obsolete > GitHub" commits from both packages. I've attached a file with the commands I used, if anyone is interested. You can use my repos by cloning them to your local machine, adding your repos as new remotes, and pushing to them. You would need to run these commands (untested): ### clone my GitHub repo to your machine git clone git at github.com:joshuaulrich/tmp-ecfun.git Ecdat
Thanks so much. Sadly, I'm still having troubles. This "git clone ..."
generates:
Enter passphrase for key '/Users/sbgraves/.ssh/id_rsa':
Sadly, I don't know the passphrase it's looking for here, and I
don't know how to find what it's looking for. Under GitHub > Settings >
"SSH and GPG keys", I see an SSH key dated two days ago, when I cloned
Ecdat from within RStudio. And in "~.ssh" I see files id_rsa and
id_rsa.pub, both created two days ago.
What do you suggest I try to get past this?
Thanks again for all your help.
Spencer Graves
cd Ecdat ### rename my GitHub repo remote from 'origin' to 'tmp' git remote rename origin tmp ### add your GitHub repo remote as 'origin' ### NOTE: this should be a new, clean repo. ### Rename your existing 'Ecdat' so you don't overwrite it git remote add origin https://github.com/sbgraves237/Ecdat ### push to your GitHub repo git push -u origin master Then you need to run similar commands for Ecfun. Best, Josh
Thanks,
Spencer
On 2019-06-29 14:09, Henrik Bengtsson wrote:
On Sat, Jun 29, 2019 at 9:43 AM Spencer Graves <spencer.graves at prodsyse.com> wrote:
Hi, Ott et al.:
What's the best way to get "Travis CI" to build and test
the two
packages, Ecdat and Ecfun, that have long been combined in the Ecdat
project?
Following Ott's advice and studying studying Wickham's "R
Packages" (http://r-pkgs.had.co.nz/), I was able to configure
RStudio so
it would sync using git with "GitHub.com/sbgraves237/Ecdat".
However,
when I tried to configure "Travis CI", it said, "No DESCRIPTION file
found, user must supply their own install and script steps".
Earlier in this thread, I think someone suggested I make the
Ecdat and Ecfun packages separate projects on GitHub (though I can't
find that suggestion now). This would not be an issue if it were all
local without version control. With RStudio managing my interface
with
GitHub, it now seems quite tricky.
I'm 99.999% confident that your life will be much much easier if you keep one R package per repository. If you don't, you'll probably be very lonely when it comes to tools etc. There are built-in 'git' commands, but also git utility tools, for extracting a subset of folders/files from git repository into new git repositories. You'll still preserve the commit history. I would deal with this in the terminal, using the 'git' client and possible some extraction tool. Also, while you spend time on this, have a look at the commit authorship that I mentioned previously. It's nice to have that in place later. After you got the above in place, then .travis.yml and appveyor.yml is pretty straightforward (might even be a copy'n'paste). Finally, I saw you put your credentials in the URL when you cloned. I don't think that's safe, your GitHub credentials will be stored in the ./.git/config file. Instead, just clone with: git clone https://github.com/sbgraves237/Ecdat.git You can then configure git to cache your HTTPS credentials for a certain time, e.g. 120 minutes, so you don't have to enter them each time you pull/push. See
for details. That's what I tell new-comers to Git(Hub|Lab|...) to use. Personally, I add my public SSH key to GitHub and then clone with the ssh protocol: git clone git at github.com:sbgraves237/Ecdat.git That way my I never have to worry entering my credentials. /Henrik
Suggestions?
Thanks again to all who have offered suggestions so far.
This
migration from R-Forge to GitHub seems complete except for the
automatic
tests provided via "Travis CI".
Spencer
On 2019-06-28 22:25, Ott Toomet wrote:
Apparently your username/password are wrong. Can you clone/push
from
other repos? You do not need authorization when cloning a public repo, so even incorrect credentials may work (haven't tested this though). But
for
push you have to have that in order. I suggest you create ssh keys, upload those to GH, and use ssh authorization instead of https. Cheers, Ott On Fri, Jun 28, 2019 at 8:18 PM Spencer Graves <spencer.graves at prodsyse.com <mailto:spencer.graves at prodsyse.com>>
wrote:
Thanks to Duncan, Henrik and Henrik, Brian, and G?bor:
I created a local copy of the new GitHub version using
the
following:
git clone
https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git
That worked in the sense that I got a local copy.
However,
after
I rolled the version number and did "git commit" on the
DESCRIPTION
files, my "git push" command generated the following:
remote: Invalid username or password.
fatal: Authentication failed for
'
https://sbgraves237:mypassword at github.com/sbgraves237/Ecdat.git/'
What am I missing? [Note: I used my actual GitHub
password in
place of "mypassword" here, and this "Authentication failed"
message
reported the GitHub password I used here.]
Thanks,
Spencer
p.s. I'm doing this under macOS Mojave 10.14.5. Also, I
added
".onAttach" functions to the R-Forge versions as Brian G.
Peterson
suggested. That seemed to work fine.
On 2019-06-28 07:13, Duncan Murdoch wrote:
> On 28/06/2019 6:26 a.m., G?bor Cs?rdi wrote:
>
>> Instead, you can do as Duncan suggested, and put a README
in your
>> R-Forge
>> repository, that points to *your* GitHub repositor(y/ies).
Then the
>> https://github.com/rforge/ecdat read only mirror will
pick this up
>> and will
>> point there as well.
>
> Just for the record: that was Henrik Singmann's
suggestion, I just
> agreed with it.
>
> Duncan Murdoch
>
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