pchisq error

I don't get the error, but I assume it's because your C function
returns a double and .C() assumes it is a void function.

    -thomas


On Mon, 19 Jan 2009, Jeremy Silver wrote:

Dear R experts,

I'm trying to call 'pchisq' from within a C subroutine. The following
error is returned:

  ** NON-convergence in pgamma()'s pd_lower_cf() f= nan.

This error message is not printed the first time I call 'pchisq' from
the C subroutine, but the second time or the next time I call 'pchisq'
from within R.

My session output is shown below:

######################

system('R CMD SHLIB reproduceError.c')

make: `reproduceError.so' is up to date.

reproduceError <- function(x){

+   dyn.load('reproduceError.so')

+   .C('tempCfunction',as.double(x))

+   dyn.unload('reproduceError.so')

+   invisible(NULL)

+ }

pchisq(5.464342,1,lower.tail = FALSE)

[1] 0.01940836

reproduceError(5.464342)

stat = 5.464342, p = 0.019408

pchisq(5.464342,1,lower.tail = FALSE)

[1] NaN

Warning messages:

1: In pchisq(5.464342, 1, lower.tail = FALSE) :

  ** NON-convergence in pgamma()'s pd_lower_cf() f= nan.

2: In pchisq(q, df, lower.tail, log.p) : NaNs produced

reproduceError(5.464342)

stat = 5.464342, p = 0.019408

reproduceError(5.464342)

stat = 5.464342, p = nan

Warning message:

In reproduceError(5.464342) :

  ** NON-convergence in pgamma()'s pd_lower_cf() f= nan.

pchisq(5.464342,1,lower.tail = FALSE)

[1] NaN

Warning messages:

1: In pchisq(5.464342, 1, lower.tail = FALSE) :

  ** NON-convergence in pgamma()'s pd_lower_cf() f= nan.

2: In pchisq(q, df, lower.tail, log.p) : NaNs produced

pchisq(5.464342,1,lower.tail = FALSE)

[1] 0.01940836

pchisq(5.464342,1,lower.tail = FALSE)

[1] 0.01940836

sessionInfo()

R version 2.8.0 (2008-10-20)

i686-pc-linux-gnu

locale:

LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C


attached base packages:

[1] stats     graphics  grDevices utils     datasets  methods   base

#############################


The C file (reproduceError.c) with the subroutine tempCfunction is:

#############################

#include <stdio.h>

#include <Rmath.h>

#include <R.h>

#include <Rinternals.h>

#include <string.h>

double tempCfunction(double *x){

 double stat = x[0];

 double pval = pchisq(stat, 1.0 , 0, 0);

 printf("stat = %f, p = %f\n",stat,pval);



 return pval;

}

#############################

Can anybody explain this behaviour?

Thanks,

Jeremy

-- 
/****************************************
Jeremy Silver
Research Assistant
University of Copenhagen, Denmark
ph: +45 3532 7917
email: j.silver at biostat.ku.dk or jere at pubhealth.ku.dk

Thomas Lumley            Assoc. Professor, Biostatistics
tlumley at u.washington.edu    University of Washington, Seattle