R[1304] general protection rip - Error running R file in Batch mode
Hi group,
I ran the file again and after 10 min. of run, the
process got interrupted.
Here is the output of the file
$bash: R CMD BATCH grand.R > grand.log
R CMD BATCH grand.R
/usr/local/lib64/R/bin/BATCH: line 55: 1758 Broken
pipe ( echo "invisible(options(echo =
TRUE))"; cat ${in}; echo ''; echo "proc.time()" )
1760 Segmentation fault | ${R_HOME}/bin/R
${opts} >${out} 2>&1
Is this because of the excess query code in one .R
file?
Any suggestions, will help me .
thanks
Sri
I created a jumbo 100*54 = 5400 lines of code by replication. I saved this file as .R and ran it as: R CMD BATCH myfile.R.. The program ran for ~40 mins. ( each operation takes 5 mins). after going home, I checked the stats and saw that the program got aborted leaving 8 output files in directory. I checked /var/log/messages and found : localhost kernel: R[1304] general protection rip:2a988c919e rsp:7fbfff87f0 error:0 postgres did not log any error message. This is my first time I am running my R code in BATCH mode. I am a new to programming in R and I have been working directly with R interface. Could any one guess what could have been the problem. Thanks Sri
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