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A general question about targeted sequencing data analysis

Li, Aiguo (NIH/NCI) 
Dear all,

One of our PIs has a targeted sequencing dataset generated a while ago.  He is interested in finding out VAF of a group of genes.  This is the first dataset of this types we have.  I would be appreciative for any suggestions on pipelines for analyzing this type of data.

Thanks

Anna

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Li, Aiguo (NIH/NCI) A general question about targeted sequencing data analysis Dec 3 Jeff Newmiller A general question about targeted sequencing data analysis Dec 3