Message-ID: <CC836F34-DB50-47A3-9607-3C1F729539FC@comcast.net>
Date: 2015-05-14T15:10:09Z
From: David Winsemius
Subject: error using the huge R package
In-Reply-To: <6F401FAF-6CE2-4236-B2E1-1AAC31C18136@well.ox.ac.uk>
On May 13, 2015, at 3:45 PM, Juan Fernandez wrote:
> Dear List
>
> I am trying to do an association network using some expression data I have, the data is really huge: 300 samples and ~30,000 genes. I would like to apply a gaussian graphical model to my data using the huge R package.
>
> Here is the code I am using
>
>> dim(data)
> #[1] 317 32200
>
>> huge.out <- huge.npn(data)
>> huge.stars <- huge.select(huge.out, criterion=?stars?)
>
> However in this last step I got the following error:
>
> Error in cor(x) : sampling?..in progress:10%
> Missing values present in input variable ?x?. Consider using use = ?pairwise.complete.obs?
Responded on StackOverflow where this duplicate question was posted yesterday
--
David.
>
> Any help would be very appreciated
>
> Juan
>
>
> [[alternative HTML version deleted]]
>
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David Winsemius
Alameda, CA, USA