calculating t-score/t-stats as my zscores
as defined here: https://huwenboshi.github.io/data%20management/2017/11/23/tips-for-formatting-gwas-summary-stats.html where Effect size is Beta
On Wed, May 6, 2020 at 9:41 AM Rui Barradas <ruipbarradas at sapo.pt> wrote:
Hello,
By z-scores do you mean function help('scale')?
Hope this helps,
Rui Barradas
?s 15:31 de 06/05/20, Ana Marija escreveu:
Hi Rui, Thank you for getting back to me. Is there is a better way to calculate Z scores if I have p values, SE and Beta? Thanks Ana On Wed, May 6, 2020 at 9:27 AM Rui Barradas <ruipbarradas at sapo.pt> wrote:
Hello, That gives the *absolute* t-scores. If it's all you need/want, then the answer is yes, you can. Hope this helps, Rui Barradas ?s 14:28 de 06/05/20, Ana Marija escreveu:
Hello, Can I apply the quantile function qt() this way? qt(pvals/2, 406-34, lower.tail = F) to get the T-scores? Thanks Ama
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