Compiling Rgraphiz on Windows 7 64bit with R-2.13.0

Hi Martin,

Thanks a lot for your help. this was spot on. With your instructions, I manage 
to successfully compile Rgraphiz.

thanks again.

regards,

Ben

----- Original Message ----
From: Martin Morgan <mtmorgan at fhcrc.org>
To: Ben Rhelp <benrhelp at yahoo.co.uk>
Cc: r-help at r-project.org
Sent: Wed, 4 May, 2011 1:01:35
Subject: Re: [R] Compiling Rgraphiz on Windows 7 64bit with R-2.13.0

On 05/03/2011 03:23 PM, Ben Rhelp wrote:
Hi all,

I am  trying to compile Rgraphiz on Windows 7 64bit with R-2.13.0. I have
 installed

Rtools213.exe from [1]. The 64bit packages in [2]  provided me with the 64 
bit
version
of graphviz. After intalling  the binary version Rgraphviz 1.30 (in 32bit) 
it
complains  (as

expected) that:
library(Rgraphviz)
 Error: package 'Rgraphviz' is not installed for 'arch=x64'

I  don't understand why the 64 bit version of graphiz is provided but not one  
for
Rgraphviz.
Have I missed it somewhere? In any case, it is  suggested to build it from
source, so I tried
following the  steps of the README from the source package of Rgraphviz (see
below). I  have the
same error than in [3]. Does anyone know what is going on or if  Kasper found 
a
solution back

in 2009?

 thanks in advance,

Cheers,

 Ben

C:\BenSave>R --arch x64 CMD build --binary  .\Rgraphviz
--binary is deprecated
* checking for file  '.\Rgraphviz/DESCRIPTION' ... OK
* preparing 'Rgraphviz':
*  checking DESCRIPTION meta-information ... OK
* cleaning src
*  installing the package to re-build vignettes
        -----------------------------------
* installing *source* package  'Rgraphviz' ...
Using the following environment variables
 GRAPHVIZ_INSTALL_DIR=C:\/BenSave\/GoodiesWin64\/graphviz
 GRAPHVIZ_INSTALL_MAJOR=2
GRAPHVIZ_INSTALL_MINOR=20
 GRAPHVIZ_INSTALL_SUBMINOR=3
These should be set to match the version of  the graphviz library you're 
using, MINOR=25  SUBMINOR=20090912.0445

Using the following compilation and linking  flags for Rgraphviz
     PKG_CPPFLAGS=-IC:\/BenSave\/GoodiesWin64\/graphviz/include/graphviz
     PKG_LIBS=-LC:\/BenSave\/GoodiesWin64\/graphviz/bin -lgvc-4 -lgraph-4  
-lcdt-4

Unfortunately, these will now be incorrect; edit  Rgraphviz/configure.win 
so that the line that includes

   test  ${GRAPHVIZ_INSTALL_MINOR} -eq "21"

reads

   test  ${GRAPHVIZ_INSTALL_MINOR} -ge "21"

Martin

     GVIZ_DEFS=-DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
Created file  src/Makevars.win
Created file R/graphviz_build_version.R
**  libs
cygwin warning:
   MS-DOS style path detected:  C:/PROGRA~1/R/R-213~1.0/etc/x64/Makeconf
   Preferred POSIX  equivalent is: 
/cygdrive/c/PROGRA~1/R/R-213~1.0/etc/x64/Makeco
 nf
   CYGWIN environment variable option "nodosfilewarning"  turns off this 
warning.
   Consult the user's guide for more  details about POSIX paths:
     http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
 x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include"  
-IC:/BenSave/GoodiesW
in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2  -DGRAPHVIZ_MINOR=20 
-DWin32
       -O2 -Wall   -std=gnu99 -c LL_funcs.c -o LL_funcs.o
x86_64-w64-mingw32-gcc  -I"C:/PROGRA~1/R/R-213~1.0/include" 
-IC:/BenSave/GoodiesW
 in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20  
-DWin32
       -O2 -Wall  -std=gnu99 -c  Rgraphviz.c -o Rgraphviz.o
x86_64-w64-mingw32-gcc  -I"C:/PROGRA~1/R/R-213~1.0/include" 
-IC:/BenSave/GoodiesW
 in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20  
-DWin32
       -O2 -Wall  -std=gnu99 -c  RgraphvizInit.c -o RgraphvizInit.o
x86_64-w64-mingw32-gcc  -I"C:/PROGRA~1/R/R-213~1.0/include" 
-IC:/BenSave/GoodiesW
 in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20  
-DWin32
       -O2 -Wall  -std=gnu99 -c  agopen.c -o agopen.o
x86_64-w64-mingw32-gcc  -I"C:/PROGRA~1/R/R-213~1.0/include" 
-IC:/BenSave/GoodiesW
 in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20  
-DWin32
       -O2 -Wall  -std=gnu99 -c  agread.c -o agread.o
x86_64-w64-mingw32-gcc  -I"C:/PROGRA~1/R/R-213~1.0/include" 
-IC:/BenSave/GoodiesW
 in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20  
-DWin32
       -O2 -Wall  -std=gnu99 -c  agwrite.c -o agwrite.o
x86_64-w64-mingw32-gcc  -I"C:/PROGRA~1/R/R-213~1.0/include" 
-IC:/BenSave/GoodiesW
 in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20  
-DWin32
       -O2 -Wall  -std=gnu99 -c  bezier.c -o bezier.o
x86_64-w64-mingw32-gcc  -I"C:/PROGRA~1/R/R-213~1.0/include" 
-IC:/BenSave/GoodiesW
 in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20  
-DWin32
       -O2 -Wall  -std=gnu99 -c  buildEdgeList.c -o buildEdgeList.o
x86_64-w64-mingw32-gcc  -I"C:/PROGRA~1/R/R-213~1.0/include" 
-IC:/BenSave/GoodiesW
 in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20  
-DWin32
       -O2 -Wall  -std=gnu99 -c  buildNodeList.c -o buildNodeList.o
x86_64-w64-mingw32-gcc  -I"C:/PROGRA~1/R/R-213~1.0/include" 
-IC:/BenSave/GoodiesW
 in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20  
-DWin32
       -O2 -Wall  -std=gnu99 -c  doLayout.c -o doLayout.o
doLayout.c: In function 'getEdgeLocs':
 doLayout.c:131:17: error: 'textlabel_t' has no member named 'p'
 doLayout.c:132:17: error: 'textlabel_t' has no member named 'p'
 doLayout.c: In function 'getNodeLayouts':
doLayout.c:243:13: error:  'textlabel_t' has no member named 'p'
doLayout.c:244:13: error:  'textlabel_t' has no member named 'p'
make: *** [doLayout.o] Error  1
ERROR: compilation failed for package 'Rgraphviz'
* removing  
'C:/Users/BVINSO~1/AppData/Local/Temp/Rtmpz6M19V/Rinst76da24d2/Rgraph
 viz'
        -----------------------------------
ERROR: package installation  failed

[1] http://www.murdoch-sutherland.com/Rtools/
[2] http://www.stats.ox.ac.uk/pub/Rtools/goodies/Win64No_/
[3] https://stat.ethz.ch/pipermail/bioconductor/2009-March/026585.html

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Compiling Rgraphiz on Windows 7 64bit with R-2.13.0

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