problem with the installation of r commander on a mac
Dear Susanne, You started this thread on r-help (though R-SIG-Mac would have been more appropriate), and so I'm copying my response to the r-help list. People will find it confusing if the messages are simply kept private. It's not obvious to me exactly what your problem is now. In particular, is the Rcmdr package working when you start XQuartz before R? I see that you've installed and loaded the FactoMineR package. Presumably the Rcmdr package was already installed. Then you executed an R script provided by the authors of the FactoMineR package, which reinstalls and then modifies the Rcmdr package. I think that this is ill-advised (as opposed to providing an Rcmdr plug-in package for FactoMineR, as used to be the case), and if you're having problems with their script, you should really contact the authors. If I read the messages correctly, the script produces warnings, not errors, oddly relating to the language you're using (odd because the authors of the FactoMineR package are French) and it's possible that everything will work correctly despite the warnings. I hope this helps, John
-----Original Message----- From: Susanne.Ettinger [mailto:susanne.ettinger at gmail.com] Sent: Wednesday, June 12, 2013 11:44 AM To: John Fox Subject: Re: [R] [R-SIG-Mac] problem with the installation of r commander on a mac Dear John, thank you very much for your quick reply - I realize I sent this email to the list without being a member, but I am a very beginner and started this morning the installation process of R. I have been printing out any possibly available information on how to get started with R and I am following the exercices exposed in the book written by Cornillon et al. (2012) to use FactoMineR to do some PCA analysis on vulnerability data. I downloaded the 3.0.1 version of R and have the 1.9-6 package of Rcmdr. I also checked into the library(tcltk) but do not get an error message, this seems to work fine. Since I open XQuartz before starting the Rcmdr library, I am getting a different error message than the ones of this morning. This is what it looks like :
> install.packages()
--- SVP s?lectionner un miroir CRAN pour cette session --- essai de l'URL 'http://cran.univ- lyon1.fr/bin/macosx/contrib/3.0/FactoMineR_1.25.tgz' Content type 'application/x-gzip' length 3397827 bytes (3.2 Mb) URL ouverte ================================================== downloaded 3.2 Mb Les packages binaires t?l?charg?s sont dans /var/folders/06/z7b6z3y102xgxls2xh251p5w0000gp/T//Rtmp13nIpm/downl oaded_packages
> library(FactoMineR)
Le chargement a n?cessit? le package : car Le chargement a n?cessit? le package : MASS Le chargement a n?cessit? le package : nnet Le chargement a n?cessit? le package : ellipse Attachement du package : ?ellipse? L'objet suivant est masqu? from ?package:car?: ellipse Le chargement a n?cessit? le package : lattice Le chargement a n?cessit? le package : cluster Le chargement a n?cessit? le package : scatterplot3d Le chargement a n?cessit? le package : leaps
> source("http://factominer.free.fr/install-facto-fr.r")
essai de l'URL 'http://cran.univ- lyon1.fr/bin/macosx/contrib/3.0/Rcmdr_1.9-6.tgz' Content type 'application/x-gzip' length 3759850 bytes (3.6 Mb) URL ouverte ================================================== downloaded 3.6 Mb The downloaded binary packages are in /var/folders/06/z7b6z3y102xgxls2xh251p5w0000gp/T//Rtmp13nIpm/downl oaded_packages essai de l'URL 'http://cran.univ- lyon1.fr/bin/macosx/contrib/3.0/FactoMineR_1.25.tgz' Content type 'application/x-gzip' length 3397827 bytes (3.2 Mb) URL ouverte ================================================== downloaded 3.2 Mb The downloaded binary packages are in /var/folders/06/z7b6z3y102xgxls2xh251p5w0000gp/T//Rtmp13nIpm/downl oaded_packages Avis dans grepl("\n", lines, fixed = TRUE) : la cha?ne de caract?res entr?e 1 est incorrecte dans cet environnement linguistique Avis dans grepl("\n", lines, fixed = TRUE) : la cha?ne de caract?res entr?e 5 est incorrecte dans cet environnement linguistique Avis dans grepl("\n", lines, fixed = TRUE) : la cha?ne de caract?res entr?e 31 est incorrecte dans cet environnement linguistique Avis dans grepl("\n", lines, fixed = TRUE) : la cha?ne de caract?res entr?e 35 est incorrecte dans cet environnement linguistique Avis dans grepl("\n", lines, fixed = TRUE) : la cha?ne de caract?res entr?e 81 est incorrecte dans cet environnement linguistique Avis dans grepl("\n", lines, fixed = TRUE) : la cha?ne de caract?res entr?e 84 est incorrecte dans cet environnement linguistique Avis dans grepl("\n", lines, fixed = TRUE) : la cha?ne de caract?res entr?e 92 est incorrecte dans cet environnement linguistique Avis dans grepl("\n", lines, fixed = TRUE) : la cha?ne de caract?res entr?e 97 est incorrecte dans cet environnement linguistique Avis dans grepl("\n", lines, fixed = TRUE) : la cha?ne de caract?res entr?e 105 est incorrecte dans cet environnement linguistique Avis dans grepl("\n", lines, fixed = TRUE) : la cha?ne de caract?res entr?e 114 est incorrecte dans cet environnement linguistique Avis dans grepl("\n", lines, fixed = TRUE) : la cha?ne de caract?res entr?e 170 est incorrecte dans cet environnement linguistique
This is where the file continues line by line with the same error message. So I think if I manage to get this fixed, I should be good to go
If you have ever seen such type of an error and could give me a hint of how to resolve the problem, this would be more than appreciated. I will let you know whether I can get the Rcmd library to run and how
if that ever happens ;-) Thank you again ! Kind regards, Susanne
__________________________ Susanne ETTINGER Postdoctoral researcher - Laboratoire Magmas et Volcans UBP - UMR6524 CNRS - M163 IRD 5, rue Kessler 63038 Clermont-Ferrand - Tel : ++33 (0)6.18.27.54.93 Fax : ++33 (0)4.73.34.67.44 - susanne.ettinger at gmail.com __________________________ "Obstacles are those frightful things you see when you take your eyes off your goal." Henry Ford Le 12 juin 2013 ? 17:03, John Fox <jfox at mcmaster.ca> a ?crit : Dear Susanne, Installation instructions for the Rcmdr are at <http://socserv.socsci.mcmaster.ca/jfox/Misc/Rcmdr/installation- notes.html>, but you've apparently done what you normally need to do to get it to work. Though you don't say so, I assume that you have the latest versions of R (3.0.1) and the Rcmdr (1.9-6), and that you've not only downloaded XQuartz, but installed it (a necessary step on Mac OS X 10.8). Beyond that, you haven't provided much detail about the error, but I suspect that for some reason XQuartz isn't finding your display. One way to check whether the error is particular to the Rcmdr is to try to load the tcltk package in R directly via library(tcltk). You might also try starting the XQuartz app *before* you start R. It's a bit disconcerting that others have occasionally reported a similar problem, solved the problem, but, as far as I know, failed to post the solution to this list, which seems to me a common courtesy. If I knew the solution, I could add it to the Rcmdr installation notes. I'm not a frequent user of Mac OS X, and I've never experienced problems installing the Rcmdr on it. I imagine that other list members will be able to offer more concrete help. Best, John ----------------------------------------------- John Fox Senator McMaster Professor of Social Statistics Department of Sociology McMaster University Hamilton, Ontario, Canada -----Original Message----- From: r-help-bounces at r-project.org [mailto:r-help-bounces at r- project.org] On Behalf Of Susanne.Ettinger Sent: Wednesday, June 12, 2013 10:06 AM To: r-help at r-project.org Subject: Re: [R] [R-SIG-Mac] problem with the installation
of
r commander on a mac Dear all, I am trying to install R and the Rcmdr package on a MacOSX 10.8.4. It appears that I keep getting the error message "Erreur :
le
chargement du package ou de l'espace de noms a ?chou? pour 'Rcmdr'" no matter what my approach is. Even downloading XQuartz-2.7.4 did not help. I found the same problem outlined on the following website https://stat.ethz.ch/pipermail/r-help/2012- October/325305.html and was wondering whether a solution to the problem has been stated since then and if you could help me with instructions how to proceed ? Thank you very much for your help ! Kind regards, Susanne
__________________________ Susanne ETTINGER Postdoctoral researcher - Laboratoire Magmas et Volcans UBP - UMR6524 CNRS - M163 IRD 5, rue Kessler 63038 Clermont-Ferrand - Tel : ++33 (0)6.18.27.54.93 Fax : ++33 (0)4.73.34.67.44 - susanne.ettinger at gmail.com __________________________ "The eye sees only what the mind is prepared to comprehend." Robertson Davies ______________________________________________ R-help at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R- project.org/posting- guide.html and provide commented, minimal, self-contained, reproducible code.