"Error: bad value" problem
Rolf Turner wrote:
On 18/12/2008, at 11:34 AM, Richard E. Chandler wrote:
Dear R-help, Like several other subscribers, I have recently encountered a problem whereby R will execute code apparently correctly and without error, but any subsequent command will yield "Error: bad value" so that R has to be killed and restarted. We have checked this out with a few different operating systems (Windows XP/Vista and Linux) and with different versions of R. We have established the following: 1. The error occurs with versions of R from 2.5.0 onwards on all the OSs we have tried, but not with earlier versions of R. 2. The error is not reproducable between machines - identical code will fail at different points on two different machines. 3. The error is not related to contributed packages, because our code doesn't use any. The code *does*, however, use repeated calls to optim() and nlm(), and passes several arguments through a sequence of functions using "...". 4. Occasionally, we get an error relating to subset replacement instead of "Error:bad value". For example:
x <- rnorm(10) x[1] <- 3
Error in x[1] <- 3 : could not find function "[<-" 5. The error behaviour changes as a result of minor modifications to print() statements in the code e.g. by inserting a line that prints the value of a well-defined variable. I suspect this really *is* a bug (particularly since it only started happening with version 2.5.0), but I figure it would be worth giving people a chance to tell me I'm an idiot before reporting it as such. In case anybody would like to try and see the error for themselves, I have uploaded some files to http://www.homepages.ucl.ac.uk/~ucakarc/Rtest/. The file ErrorDemo.r is the main script - see the file header there for more details. Files momfit.r and elmstats.dat are also required for this example to work. I'm sorry that it isn't a very simple example, but I haven't seen a simple illustration of the problem (and I couldn't find any examples in the list archives either).
I can confirm that the error occurs. I downloaded the files and sourced ``ErrorDemo.R''. Doing x <- rnorm(10) after doing so triggered the error. Subsequently attempting traceback() (or anything else) simply triggered the error again. Good luck to R Core in tracking this down!
Unfortunately, there's at least on R Core member for which it does NOT happen... Fedora 9 i686, R 2.8.0 and 2.8.1 RC (2008-12-15 r47214)
O__ ---- Peter Dalgaard ?ster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk) FAX: (+45) 35327907