Letter-based representation of pairwise comparisons
I solved it. It was quite easy: Because each test is a list, it's necessary to specify which element contains the comparison matrix (p values). Let me show it:
show(test)
An object of class ?pairwise.htest?
$method
[1] "Wilcoxon rank sum test"
$data.name
[1] "SAND and Organ"
$p.value
FlowerA FlowerB FlowerC FlowerD LeafA
FlowerB 0.000617030 NA NA NA NA
FlowerC 0.000617030 0.004319210 NA NA NA
FlowerD 0.000617030 0.000617030 0.000617030 NA NA
LeafA 0.006141902 0.006141902 0.006141902 0.006141902 NA
LeafC 0.000617030 0.000617030 0.000617030 0.000617030 0.3242459
$p.adjust.method
[1] "bonferroni"
multcompLetters(test$p.value)
FlowerB FlowerC FlowerD LeafA LeafC
"a" "b" "c" "d" "e"
Thank you!
Retama
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