How to load fasta file with openPrimeR?

I think the problem is system.file, which is R base, but I'll go for
bioconductor. Thanks
As this is a Bioconductor package, why not ask on their support page:

https://support.bioconductor.org/

Bert Gunter

"The trouble with having an open mind is that people keep coming along and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )

On Mon, Feb 15, 2021 at 10:11 AM Luigi Marongiu <marongiu.luigi at gmail.com> wrote:
Hello,
I am trying to load a fast file with the package 'openPrimeR'. The
manual (https://www.bioconductor.org/packages/release/bioc/vignettes/openPrimeR/inst/doc/openPrimeR_vignette.html)
says to use:
```
fasta.file <- system.file("extdata", "IMGT_data", "templates",
                "Homo_sapiens_IGH_functional_exon.fasta", package =
"openPrimeR")
# Load the template sequences from 'fasta.file'
seq.df.simple <- read_templates(fasta.file)
```
but if I give these commands to a local file:
```
fasta.file <- system.file("extdata", "IMGT_data", "templates",
                "stx.fa", package = "openPrimeR")
fasta.file <- system.file("stx.fa", package = "openPrimeR")
```
where stx.fa il the file I wanted to open and that is present in the
working directly. I get only an empty object.
What am I getting wrong?
Thank you

--
Best regards,
Luigi

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Best regards,
Luigi

How to load fasta file with openPrimeR?

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