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Tunnelling X for R graphics

To answer your basic question, you do need to shut down everything 
involivng X, that is X11() devices and the X11 dataeditor.  If you do 
that (and graphics.off() will suffice for the first), you should be 
able to re-open an X11 device on another display (which is what 
presumably a new VNC connection gives you).

The warning comes from any X erorr, and it is not possible to know how 
serious it is without external information.
On Mon, 2 Feb 2009, Adam D. I. Kramer wrote: