SNPRelate package error
Dear all, I am using the R package SNPRelate but I found an error when I run the following command. Do you know what might be the problem? Thanks in advance.
vcf.fn <- system.file("extdata", "sequence.vcf", package="SNPRelate")
snpgdsVCF2GDS(vcf.fn, "test.gds")
Start snpgdsVCF2GDS ...
Open C:/Users/med-jft/Documents/R/win-library/2.15/SNPRelate/extdata/sequence.vcf
Scanning ...
Error in createfn.gds(outfn.gds) :
Can not create file 'test.gds'. Access is denied.
sessionInfo()
R version 2.15.0 (2012-03-30) Platform: x86_64-pc-mingw32/x64 (64-bit) locale: [1] LC_COLLATE=Swedish_Sweden.1252 LC_CTYPE=Swedish_Sweden.1252 LC_MONETARY=Swedish_Sweden.1252 LC_NUMERIC=C LC_TIME=Swedish_Sweden.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] SNPRelate_0.9.7 gdsfmt_0.9.10 loaded via a namespace (and not attached): [1] tools_2.15.0 Best regards, Jo?o Fadista, Ph.D. Post Doc Lund University Diabetes Centre CRC, Malm? University Hospital Jan Waldenstr?ms gata 35, building 60, level 13 SE-205 02 Malm?, Sweden Tel: +46 (0)40 391237 e-mail: joao.fadista at med.lu.se