Message-ID: <4D2F2619.8090202@gmx.com>
Date: 2011-01-13T16:19:37Z
From: Duke
Subject: speed up subsetting with certain conditions
In-Reply-To: <4D2E3CD2.8030204@gmx.com>
On 1/12/11 6:44 PM, Duke wrote:
>
> Thanks so much for your suggestion Martin. I had Bioconductor
> installed but I honestly do not know all its applications. Anyway, I
> am testing GenomicRanges with my data now. I will report back when I
> get the result.
>
I got the results. My code took ~ 580 min ( ~ 10 hrs) to finish, where
as using GenomicRanges per Martin suggested, it took only 22 min (about
30 times less!). Thanks so much for this improvement Martin.
D.