Message-ID: <BN8PR04MB6241F386D4924EB76C7A372CF9B09@BN8PR04MB6241.namprd04.prod.outlook.com>
Date: 2021-10-06T19:02:12Z
From: Martin Morgan
Subject: RSQLite slowness
In-Reply-To: <YV3v0y6SEJdLyrOb@posteo.no>
https://support.bioconductor.org and the community slack (sign up at https://bioc-community.herokuapp.com/ ) as well as the general site https://bioconductor.org . Actually your question sounds like a SQLite question ? JOIN a table, versus parameterized query. One could perhaps construct the relevant example at the sqlite command line?
Martin Morgan
On 10/6/21, 2:50 PM, "R-help" <r-help-bounces at r-project.org> wrote:
Thank you Bert, I set up a new thread on
BioStars [1]. So far, I'm a bit
unfamilliar with Bioconductor (but will
hopefully attend a course about it in
November, which I'm kinda hyped about),
other than installing and updating R
packages using BiocManager .... Did you
think of something else than
BioStars.org when saying ?Bioconductor??
The question could be viewed as gene
related, but I think it is really about
how can one easier than with sqlite
handle large tsv files, and why is that
parser thing so slow ... I think this
is more like a core R thing than gene
related question ...
[1] https://www.biostars.org/p/9492486/
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