Installing odesolve under MacOSX
I realize this may not be the most helpful, because I have R 1.8.1 installed from source code, not RAqua. Nonetheless, odesolve appears to install successfully, albeit with some warning messages about multiple symbol definitions. OS X 10.2.8. Were there *no* other error messages? -Don
version
_ platform powerpc-apple-darwin6.8.5 arch powerpc os darwin6.8.5 system powerpc, darwin6.8.5 status Patched major 1 minor 8.1 year 2004 month 01 day 12 language R
install.packages('odesolve')
trying URL `http://cran.r-project.org/src/contrib/PACKAGES' Content type `text/plain; charset=iso-8859-1' length 156465 bytes opened URL .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .. downloaded 152Kb trying URL `http://cran.r-project.org/src/contrib/odesolve_0.5-8.tar.gz' Content type `application/x-tar' length 71163 bytes opened URL .......... .......... .......... .......... .......... .......... ......... downloaded 69Kb * Installing *source* package 'odesolve' ... ** libs g77 -fno-common -g -O2 -c bnorm.f -o bnorm.o gcc -no-cpp-precomp -I/Users/macq/darwin.apps/R/R-1.8.1/build/include -I/sw/include -fno-common -I/sw/include -c call_lsoda.c -o call_lsoda.o g77 -fno-common -g -O2 -c cfode.f -o cfode.o g77 -fno-common -g -O2 -c dgbfa.f -o dgbfa.o g77 -fno-common -g -O2 -c dgbsl.f -o dgbsl.o g77 -fno-common -g -O2 -c dgefa.f -o dgefa.o g77 -fno-common -g -O2 -c dgesl.f -o dgesl.o g77 -fno-common -g -O2 -c ewset.f -o ewset.o g77 -fno-common -g -O2 -c fdump.f -o fdump.o g77 -fno-common -g -O2 -c fnorm.f -o fnorm.o g77 -fno-common -g -O2 -c i1mach.f -o i1mach.o g77 -fno-common -g -O2 -c intdy.f -o intdy.o g77 -fno-common -g -O2 -c j4save.f -o j4save.o g77 -fno-common -g -O2 -c lsoda.f -o lsoda.o gcc -no-cpp-precomp -I/Users/macq/darwin.apps/R/R-1.8.1/build/include -I/sw/include -fno-common -I/sw/include -c odesolve_utils.c -o odesolve_utils.o g77 -fno-common -g -O2 -c prja.f -o prja.o g77 -fno-common -g -O2 -c solsy.f -o solsy.o g77 -fno-common -g -O2 -c stoda.f -o stoda.o g77 -fno-common -g -O2 -c vmnorm.f -o vmnorm.o g77 -fno-common -g -O2 -c xercnt.f -o xercnt.o g77 -fno-common -g -O2 -c xerrwv.f -o xerrwv.o g77 -fno-common -g -O2 -c xsetf.f -o xsetf.o gcc -bundle -flat_namespace -undefined suppress -L/sw/lib -o odesolve.so bnorm.o call_lsoda.o cfode.o dgbfa.o dgbsl.o dgefa.o dgesl.o ewset.o fdump.o fnorm.o i1mach.o intdy.o j4save.o lsoda.o odesolve_utils.o prja.o solsy.o stoda.o vmnorm.o xercnt.o xerrwv.o xsetf.o -framework vecLib -L/sw/lib -L/usr/local/lib/gcc/powerpc-apple-darwin6.6/3.4 -L/usr/local/lib/gcc/powerpc-apple-darwin6.6/3.4/../../.. -lfrtbegin -lg2c -lSystem -lcc_dynamic -L/Users/macq/darwin.apps/R/R-1.8.1/build/bin -lR ld: warning multiple definitions of symbol _xerbla_ /System/Library/Frameworks/vecLib.framework/vecLib(ProjectBuilderMasterObjectFile.o) definition of _xerbla_ /Users/macq/darwin.apps/R/R-1.8.1/build/bin/libR.dylib(print.lo) definition of _xerbla_ ld: warning multiple definitions of symbol _i1mach_ i1mach.o definition of _i1mach_ in section (__TEXT,__text) /Users/macq/darwin.apps/R/R-1.8.1/build/bin/libR.dylib(i1mach.lo) definition of _i1mach_ ld: warning multiple definitions of symbol _BC /sw/lib/libreadline.4.dylib(terminal.so) definition of _BC /sw/lib/libncurses.5.dylib(lib_termcap.lo) definition of _BC ld: warning multiple definitions of symbol _UP /sw/lib/libreadline.4.dylib(terminal.so) definition of _UP /sw/lib/libncurses.5.dylib(lib_termcap.lo) definition of _UP ld: warning multiple definitions of symbol _PC /sw/lib/libreadline.4.dylib(terminal.so) definition of _PC /sw/lib/libncurses.5.dylib(lib_tputs.lo) definition of _PC ** R ** data ** demo ** inst ** help >>> Building/Updating help pages for package 'odesolve' Formats: text html latex example ccl4data text html latex example ccl4data.avg text html latex example lsoda text html latex example rk4 text html latex example * DONE (odesolve) Delete downloaded files (y/N)? y
example('lsoda','odesolve')
## followed by various output and some graphs
At 3:05 PM +0100 2/5/04, Maartje Raijmakers wrote:
Installing odesolve in Raqua 1.8.0 or 1.8.1 under MacOSX gives the following message: Warning message: Installation of package odesolve had non-zero exit status in: install.packages(ui.pkgs, CRAN = getOption(where), lib = .libPaths()[1]) Moreover, in the source of odesolve is no makefile. Does anyone know how to get a proper installation? Maartje
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-------------------------------------- Don MacQueen Environmental Protection Department Lawrence Livermore National Laboratory Livermore, CA, USA