Background color in a grid plot seems to interfere with plot()

Dear Paul,

Thank you for helping. This works great. 

I then tried to put in a grid (via grid()). Why does that fail? 

Cheers,

Marius


require(grid)
require(gridBase)

pdf(file="Rplot.pdf", width=8, height=8, onefile=FALSE)

## set up the grid layout
plot.new() # start (empty) new page with 'graphics'
gl <- grid.layout(5, 5, widths=unit(c(1.8, 8, 0.8, 8, 0.8), "cm"),
	  heights=unit(c(0.8, 8, 0.8, 8, 1.5), "cm"))
pushViewport(viewport(layout=gl))

## plot data
par. <- par(no.readonly=TRUE) # save plot settings
for(i in 1:2) { # rows
   i. <- if(i > 1) i+2 else i+1 # jumping over gaps
   for(j in 1:2) { # columns
       j. <- if(j > 1) j+2 else j+1 # jumping over gaps
       pushViewport(viewport(layout.pos.row=i., layout.pos.col=j.))
       grid.rect(gp=gpar(fill="gray90")) # background
       par(plt=gridPLT())
       ## plot
       par(new=TRUE) # always do this before each new 'graphics' plot
       grid(col=1)
       plot(1:10, 1:10, log="y", xlab="", ylab="",
            xaxt=if(i==2) "s" else "n", yaxt=if(j==1) "s" else "n")
       upViewport()
   }
}
par(par.)
dev.off()



Paul Murrell <paul at stat.auckland.ac.nz> writes:

Hi

On 24/09/12 09:36, Marius Hofert wrote:

Hi,

Why does the upper left panel (in the plot below) not have a gray

background?

That is a symptom of the conflict that occurs when the 'graphics'

package and

the 'grid' package both try to initialise a new page.
A good rule of thumb is to start a new page with 'graphics' first and

THEN add

grid' stuff ('grid' is better at sharing), so a minor adjustment to

your code

would be (#PAUL marks the changes) ...


pdf(file="Rplot.pdf", width=8, height=8, onefile=FALSE)
#PAUL
# Start (empty) new page with 'graphics'
plot.new()
## set up the grid layout
gl <- grid.layout(5, 5, widths=unit(c(1.8, 8, 0.8, 8, 0.8), "cm"),
		  heights=unit(c(0.8, 8, 0.8, 8, 1.5), "cm"))
pushViewport(viewport(layout=gl))
## plot data
par. <- par(no.readonly=TRUE) # save plot settings
for(i in 1:2) { # rows
    i. <- if(i > 1) i+2 else i+1 # jumping over gaps
    for(j in 1:2) { # columns
        j. <- if(j > 1) j+2 else j+1 # jumping over gaps
        pushViewport(viewport(layout.pos.row=i., layout.pos.col=j.))
        grid.rect(gp=gpar(fill="gray90")) # background
        par(plt=gridPLT())
        ## plot
        #PAUL
        # ALWAYS do this before each new 'graphics' plot
        par(new=TRUE)
        plot(1:10, 1:10, log="y", xlab="", ylab="",
             xaxt=if(i==2) "s" else "n", yaxt=if(j==1) "s" else "n")
        upViewport()
    }
}
par(par.)
dev.off()


Hope that helps.

Paul

Cheers,

Marius


require(grid)
require(gridBase)

pdf(file="Rplot.pdf", width=8, height=8, onefile=FALSE)

## set up the grid layout
gl <- grid.layout(5, 5, widths=unit(c(1.8, 8, 0.8, 8, 0.8), "cm"),
		  heights=unit(c(0.8, 8, 0.8, 8, 1.5), "cm"))
if(FALSE) grid.show.layout(gl)
pushViewport(viewport(layout=gl))

## plot data
par. <- par(no.readonly=TRUE) # save plot settings
for(i in 1:2) { # rows
     i. <- if(i > 1) i+2 else i+1 # jumping over gaps
     for(j in 1:2) { # columns
         j. <- if(j > 1) j+2 else j+1 # jumping over gaps
         pushViewport(viewport(layout.pos.row=i.,

layout.pos.col=j.))

         grid.rect(gp=gpar(fill="gray90")) # background
         par(plt=gridPLT())
         ## plot
         plot(1:10, 1:10, log="y", xlab="", ylab="",
              xaxt=if(i==2) "s" else "n", yaxt=if(j==1) "s" else

"n")

         par(new=TRUE) # to be run after first plot
         upViewport()
     }
}
par(par.)
dev.off()