Sweave - How to use local objects in code chunks
I don't think it works that way. The .Rnw file should be self-contained. Put all the R code in the .Rnw file (or keep it in a separate file and source() it into the .Rnw file). -Ista On Sat, Jan 16, 2010 at 3:35 PM, Jan-Henrik P?tter
<henrik.poetter at gmx.de> wrote:
Hello,
I wrote a function create_report that calls the function Sweave.
create_report shall be used to create a pdf-report about an lm-Object which
is passed as an argument to create_report.
I try to use an object sel_model, that is created within the function
environment of create_report and later on used within the first code chunk
of the file report_template.rnw.
When I use following code I get an error message that the object sel_model
could not been found. How can I achieve to use objects within code-chunks
that are not globally available, but only within my function call of
create_report? Is it only possible to use globally available objects within
a code chunk?
create_report<-function(model_lst){
#define parameters
sel_model<-model_lst
Sweave('report_template.rnw')
tools::texi2dvi("report_template.tex", pdf=TRUE)
}
create_report(p3)
this is the file report_template.rnw
\documentclass[a4paper]{article}
\begin{document}
<<echo=FALSE>>=
summary(sel_model)
@
\begin{center}
<<fig=TRUE,echo=FALSE>>=
plot_fx(sel_model)
@
\end{center}
\end{document}
? ? ? ?[[alternative HTML version deleted]]
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Ista Zahn Graduate student University of Rochester Department of Clinical and Social Psychology http://yourpsyche.org