how to perform multiple comparison？
Hi laomeng_3, Have a look at the padjust function (stats). Jim
On Fri, May 20, 2016 at 1:56 AM, laomeng_3 <laomeng_3 at 163.com> wrote:
Hi all:
As to the anova, we can perform multiple comparison via TukeyHSD.
But as to chi-square test for frequency table,how to perform multiple comparison?
For example, if I want to compare 3 samples' ratio(the data has 3 rows,each row corresponds to 1 sample,and has 2 columns,each column corresponds to positive and negative respectively).
dat<-matrix(c(6,30,8,23,14,3),nrow=3)
dat
[,1] [,2]
[1,] 6 23
[2,] 30 14
[3,] 8 3
chisq.test(dat)
Pearson's Chi-squared test
data: dat
X-squared = 17.9066, df = 2, p-value = 0.0001293
The result shows that the difference between the 3 samples is significant.But if I want to perform multiple comparison to find out which pair of samples is significantly different,which function should be used?
Many thanks for your help.
My best
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