Error in dis[sppInSample, sppInSample]:subscript out of bounds
As a follow-up to Don's reply have a look at https://github.com/hadley/devtools/wiki/Reproducibility and/or ttp://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example for some useful suggestions on how to frame a question. If you need to include sample data with your reply please read carefully about the dput function and supply your data in dput() format. John Kane Kingston ON Canada
-----Original Message----- From: marion.howard at hotmail.com Sent: Thu, 2 Apr 2015 07:04:50 +1000 To: r-help at r-project.org Subject: [R] Error in dis[sppInSample,sppInSample]:subscript out of bounds Hello, I am new to R and am encountering an error message that I cannot find a solution for. I am attempting to calculate MPD (mean pairwise distance), without weighting for abundance, with a community species list and a phylogenetic tree in newick format with branch lengths. I have read in both list and tree .txt files and calculated PD without any problem. To calculate MPD I have entered:>MPD1=mpd(list,cophenetic(tree)) Error:Error in dis[sppInSample, sppInSample] : subscript out of bounds Thank you for you helpCheersMarion. [[alternative HTML version deleted]]
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