Covid-19 Variants & Lineages
Dear Ivan, Thank you very much. Indeed, I missed the download button. The csv file seems to contain all the mutations in a usable format. Sincerely, Leonard
On 1/24/2023 11:29 PM, Ivan Krylov wrote:
On Tue, 24 Jan 2023 22:26:34 +0200 Leonard Mada via R-help <r-help at r-project.org> wrote:
The data on the NCBI page "Explore in SARS-CoV-2 Variants Overview" seems very difficult to download: https://www.ncbi.nlm.nih.gov/activ E.g.: (in the lower-left corner, but impossible to copy) NSP1: S135R NSP13: R392C
The page has a "download" button, which requests https://www.ncbi.nlm.nih.gov/genomes/VirusVariation/activ/?report=download_lineages and offers to save it as "lineages.csv". I think that the information you're looking for is available if you feed this URL to read.csv() and look at the aa_definition column.