Urgent Help with R calculation correlation coefficient
On Mon, Dec 6, 2010 at 11:02 AM, chintan85 <chintanpathak15 at yahoo.com> wrote:
Hi,
I am trying to calculate correlation coefficient for gene expression data.
Tab delimited file looks like this
Id v1 ? v2 ? ?v3
df 56 ? 90 ? ?45
gh 87 ? 98 ? ?78
ty 89 ? ?78 ? ?67
I used this code
[code]
gse20437 <- read.csv("C:/Users//Desktop/data/GSE20437_matrix.txt",header =
TRUE, sep = ",", strip.white = TRUE)
gsecor <- cor(gse20437, method ="pearson") or
gsecor <- cor(gse20437)
[/code]
i get error x must be numeric..
Can you post the following? str(gse20437) Liviu
can anybody help me. thanks in advance -- View this message in context: http://r.789695.n4.nabble.com/Urgent-Help-with-R-calculation-correlation-coefficient-tp3074206p3074206.html Sent from the R help mailing list archive at Nabble.com.
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