Trouble with R CMD check
Thanks! That's seemed to partially work, but now when I try to load it
in R I get:
library(polsplineRS)
Error in library.dynam("polspline", pkg, lib) :
shared library 'polspline' not found
Error in library(polsplineRS) : .First.lib failed for 'polsplineRS'
-----Original Message-----
From: Duncan Murdoch [mailto:murdoch at stats.uwo.ca]
Sent: Friday, March 07, 2008 1:36 PM
To: Shewcraft, Ryan
Cc: r-help at r-project.org
Subject: Re: [R] Trouble with R CMD check
On 3/7/2008 1:21 PM, Shewcraft, Ryan wrote:
Friends, I changed one line of a package at the source level and then rebuilt
it.
When I run R CMD check, I get an error:
You're getting lots of warnings from the compiler; presumably those have nothing to do with you. Then at the end you're getting an error because you haven't set up your R toolset completely: hhc: not found This is the Microsoft Help Workshop help compiler. Either you didn't install it, or didn't put it in the right place. But you can avoid the error by just not building compiled help, using Rcmd install --docs=normal polsplineRS Duncan Murdoch
installing R.css in C:/polsplineRS.Rcheck ---------- Making package polsplineRS ------------ adding build stamp to DESCRIPTION making DLL ... making hareall.d from hareall.c making heftall.d from heftall.c making lsdall.d from lsdall.c making lspecall.d from lspecall.c making nlsd.d from nlsd.c making polyall.d from polyall.c making polymars.d from polymars.c gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c hareall.c -o hareall.o hareall.c: In function `gremdim': hareall.c:2127: warning: unused variable `x' hareall.c: In function `compall': hareall.c:1656: warning: 'lala' might be used uninitialized in this function hareall.c: In function `newton': hareall.c:1876: warning: 'rall' might be used uninitialized in this function hareall.c: In function `search': hareall.c:646: warning: 'iloc' might be used uninitialized in this function hareall.c:646: warning: 'lloc' might be used uninitialized in this function hareall.c:646: warning: 'uloc' might be used uninitialized in this function hareall.c: In function `adders': hareall.c:529: warning: 'crit1' might be used uninitialized in this function hareall.c: In function `share': hareall.c:2126: warning: 'bb1' might be used uninitialized in this function hareall.c:2126: warning: 'bt1' might be used uninitialized in this function hareall.c:2126: warning: 'bb2' might be used uninitialized in this function hareall.c:2126: warning: 'bw' might be used uninitialized in this function hareall.c:2127: warning: 'wald' might be used uninitialized in this function hareall.c: In function `sphare': hareall.c:3417: warning: 's' might be used uninitialized in this function hareall.c: At top level: hareall.c:132: warning: 'iigvector' declared `static' but never
defined
gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c heftall.c -o heftall.o heftall.c: In function `sheft': heftall.c:301: warning: 'nintx' might be used uninitialized in this function heftall.c:301: warning: 'addi' might be used uninitialized in this function heftall.c:1848: warning: 'loloc' might be used uninitialized in this function heftall.c:1848: warning: 'uploc' might be used uninitialized in this function heftall.c:1848: warning: 'nowloc1' might be used uninitialized in this
function gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c lsdall.c -o lsdall.o lsdall.c: In function `knotplace': lsdall.c:1890: warning: 'ia' might be used uninitialized in this function lsdall.c:1895: warning: 'u3' might be used uninitialized in this function lsdall.c:1895: warning: 'u4' might be used uninitialized in this function lsdall.c: In function `liter': lsdall.c:369: warning: 'zerror' might be used uninitialized in this function lsdall.c:370: warning: 'newlikelihood' might be used uninitialized in this function lsdall.c: In function `logcensor': lsdall.c:51: warning: 'xnknots' might be used uninitialized in this function lsdall.c:55: warning: 'xczheta' might be used uninitialized in this function lsdall.c: In function `pqlsd': lsdall.c:2908: warning: 'j' might be used uninitialized in this function lsdall.c: At top level: lsdall.c:1458: warning: 'fun2' defined but not used lsdall.c:1471: warning: 'fun48' defined but not used gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c lspecall.c -o lspecall.o lspecall.c: In function `tsadd': lspecall.c:626: warning: 'b2' might be used uninitialized in this function gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c
nlsd.c
-o nlsd.o nlsd.c: In function `ludcmp': nlsd.c:695: warning: 'imax' might be used uninitialized in this function nlsd.c: In function `setupspace': nlsd.c:1717: warning: 'm' might be used uninitialized in this function nlsd.c: In function `startspace': nlsd.c:1838: warning: 'l' might be used uninitialized in this function nlsd.c: In function `pompall': nlsd.c:1158: warning: 'f' might be used uninitialized in this function nlsd.c: In function `nlsd': nlsd.c:747: warning: 'nowloc1' might be used uninitialized in this function nlsd.c:747: warning: 'loloc' might be used uninitialized in this function nlsd.c:747: warning: 'uploc' might be used uninitialized in this function gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c polyall.c -o polyall.o polyall.c: In function `poly': polyall.c:3121: warning: 'okd' might be used uninitialized in this function polyall.c:2777: warning: 'aj' might be used uninitialized in this function polyall.c:2777: warning: 'ak' might be used uninitialized in this function polyall.c:2777: warning: 'sj' might be used uninitialized in this function polyall.c:2777: warning: 'sk' might be used uninitialized in this function polyall.c:2777: warning: 'bbi' might be used uninitialized in this function polyall.c:2777: warning: 'bbj' might be used uninitialized in this function polyall.c:2777: warning: 'bbk' might be used uninitialized in this function polyall.c:2778: warning: 'baj' might be used uninitialized in this function polyall.c:2778: warning: 'bak' might be used uninitialized in this function polyall.c:2778: warning: 'bsj' might be used uninitialized in this function polyall.c:2778: warning: 'bsk' might be used uninitialized in this function polyall.c:395: warning: 'iloc' might be used uninitialized in this function polyall.c:395: warning: 'lloc' might be used uninitialized in this function polyall.c:395: warning: 'uloc' might be used uninitialized in this function polyall.c: In function `proj': polyall.c:1794: warning: 'k' might be used uninitialized in this function polyall.c:1794: warning: 'k0' might be used uninitialized in this function polyall.c:1794: warning: 'k1' might be used uninitialized in this function polyall.c:1794: warning: 'k2' might be used uninitialized in this function polyall.c:1794: warning: 'k3' might be used uninitialized in this function polyall.c:1794: warning: 'k4' might be used uninitialized in this function polyall.c:1794: warning: 'k5' might be used uninitialized in this function polyall.c:1794: warning: 'k6' might be used uninitialized in this function polyall.c: In function `spoly': polyall.c:945: warning: 'numbers' might be used uninitialized in this function polyall.c:946: warning: 'ranges' might be used uninitialized in this function polyall.c:948: warning: 'tdata' might be used uninitialized in this function polyall.c:948: warning: 'zdata' might be used uninitialized in this function polyall.c:949: warning: 'loss' might be used uninitialized in this function polyall.c:1575: warning: 'bestl' might be used uninitialized in this function polyall.c:1575: warning: 'bestu' might be used uninitialized in this function gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c polymars.c -o polymars.o polymars.c: In function `fit_model': polymars.c:513: warning: unused variable `intercept_sd' polymars.c: In function `find_best_candidate': polymars.c:1361: warning: unused variable `dok1' polymars.c:1361: warning: unused variable `dok2' polymars.c: In function `initial_model': polymars.c:2585: warning: unused variable `mesh_index' polymars.c: In function `lsame': polymars.c:3925: warning: suggest parentheses around && within || polymars.c:3926: warning: suggest parentheses around && within || polymars.c:3929: warning: suggest parentheses around && within || polymars.c:3930: warning: suggest parentheses around && within || polymars.c: In function `dspmv': polymars.c:4963: warning: suggest parentheses around && within || polymars.c: In function `condition': polymars.c:6566: warning: unused variable `tt' polymars.c: In function `fit_as_candidate': polymars.c:1046: warning: 'knot1_value' might be used uninitialized in
this function polymars.c:1046: warning: 'knot2_value' might be used uninitialized in
this function polymars.c: In function `find_best_candidate': polymars.c:1686: warning: 'current_predictor_values2' might be used uninitialized in this function polymars.c:1686: warning: 'knot1_value' might be used uninitialized in
this function polymars.c:1686: warning: 'knot2_value' might be used uninitialized in
this function polymars.c: In function `fit_model': polymars.c:2164: warning: 'trailing_column' might be used uninitialized in this function polymars.c:2586: warning: 'knot_1_value' might be used uninitialized in this function polymars.c:2586: warning: 'knot_2_value' might be used uninitialized in this function polymars.c:2591: warning: 'means' might be used uninitialized in this function polymars.c:2591: warning: 'SDs' might be used uninitialized in this function polymars.c: In function `polymars': polymars.c:358: warning: 'mesh' might be used uninitialized in this function polymars.c:6318: warning: 'mesh' might be used uninitialized in this function polymars.c:6318: warning: 'mesh' might be used uninitialized in this function g77 -O2 -Wall -c allpack.f -o allpack.o allpack.f: In subroutine `xdsidi': In file included from allpack.f:0: allpack.f:476: warning: 'ten' might be used uninitialized in this function windres --include-dir c:/PROGRA~1/R/R-24~1.1/include -i polsplineRS_res.rc -o polsplineRS_res.o gcc -shared -s -o polsplineRS.dll polsplineRS.def hareall.o heftall.o lsdall.o lspecall.o nlsd.o polyall.o polymars.o allpack.o polsplineRS_res.o -Lc:/PROGRA~1/R/R-24~1.1/bin -Lc:/PROGRA~1/R/R-24~1.1/bin -lRblas -lg2c -lg2c -lR ... DLL made installing DLL installing R files installing man source files installing indices installing help
>>> Building/Updating help pages for package 'polsplineRS'
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hhc: not found cp: cannot stat `C:/polsplineRS.Rcheck/00_pkg_src/polsplineRS/chm/polsplineRS.chm': No
such file or directory make[1]: *** [chm-polsplineRS] Error 1 make: *** [pkg-polsplineRS] Error 2 *** Installation of polsplineRS failed *** Removing 'C:/polsplineRS.Rcheck/polsplineRS' I am slowly figuring out all of this R stuff so I apologize for continually bothering everyone. Thanks, Ryan Shewcraft The Blackstone Group, L.P.
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