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write.table file="file.txt" help

Look at ?paste

for (j in 1:10) { 
   write.table(j, file=paste("haplo.txt", j, sep="."), 
               row.names=F, col.names=F, append=F, quote=F)
}

BTW, there have been many similar posts like this in the past. They are
easily found using the search function at 
http://cran.r-project.org/search.html 

HTH, Andy