Problem with systemfit 0.7-3 and transformed variables
On Wednesday 25 May 2005 18:25, Mikko Pakkanen wrote:
We did not notice this shortcoming of systemfit() so far. Unfortunately, I don't have the time in the next few days to look into the code and figure out how to enable transformed variables. I suggest that you either create transformed variables by hand or you modify the systemfit code to enable this and send us the patch. I prefer the second :-) (that's the philosophy of open-source software like R: useRs become developeRs).
Luckily, I had some time to check the code. Debugger revealed that the
problems are caused by the model.frame function which is used to compile
the '$data' data frame. I don't need that data frame so much, so I just
substituted model.frame with model.matrix which apparently doesn't cause
this error with transformed variables. However, I tuned it a bit further,
so that it should still return an identical '$data' data frame, despite the
modification.
I've only tested this with my example and it appears to be OK. Still, I
think this should be considered a "quick & dirty" fix -there are probably
better ways to do it. But, I hope it gives the idea. Here's my attempt:
mikko at briscoe R $ diff -u systemfit.R systemfit-patched.R
--- systemfit.R 2004-11-26 11:17:36.000000000 +0200
+++ systemfit-patched.R 2005-05-25 18:55:55.568944699 +0300
@@ -624,7 +624,11 @@
Terms <- terms( eqns[[i]], data = data)
m$formula <- Terms
m <- eval(m, parent.frame())
- datai <- model.frame(Terms, m)
+ resp <- model.extract(m, "response")
+ ## using model.matrix instead of model.frame, need to get the
output variable separately
+ datai <- data.frame(cbind(resp, (model.matrix(Terms, m))[,-1]))
+ ## I guess there's a better way to extract the name of the output
variable?
+ names(datai)[1] <- as.character(terms(eqns[[i]]))[2]
if(method=="2SLS" | method=="3SLS") {
#datai <- cbind( datai, model.frame( instl[[i]] ))
# the following lines have to be substituted for the previous
@@ -634,7 +638,8 @@
Terms <- terms(instl[[i]], data = data)
m$formula <- Terms
m <- eval(m, parent.frame())
- datai <- cbind( datai, model.frame(Terms, m))
+ ## used previously model.frame
+ datai <- cbind( datai, as.data.frame((model.matrix(Terms, m))[,-1]))
}
if(i==1) {
Thank you very much for the patch. I have uploaded a patched version of systemfit (version 0.7-4) to CRAN. It is also available on my website now: http://www.uni-kiel.de/agrarpol/ahenningsen/index-e.html Best wishes, Arne
Regards, -Mikko.
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Arne Henningsen Department of Agricultural Economics University of Kiel Olshausenstr. 40 D-24098 Kiel (Germany) Tel: +49-431-880 4445 Fax: +49-431-880 1397 ahenningsen at agric-econ.uni-kiel.de http://www.uni-kiel.de/agrarpol/ahenningsen/