Message-ID: <20230125002923.4bde7acd@Tarkus>
Date: 2023-01-24T21:29:23Z
From: Ivan Krylov
Subject: Covid-19 Variants & Lineages
In-Reply-To: <f89f1873-eaa4-4d6a-0d2d-a2514998ca46@syonic.eu>
On Tue, 24 Jan 2023 22:26:34 +0200
Leonard Mada via R-help <r-help at r-project.org> wrote:
> The data on the NCBI page "Explore in SARS-CoV-2 Variants Overview"
> seems very difficult to download:
> https://www.ncbi.nlm.nih.gov/activ
> E.g.: (in the lower-left corner, but impossible to copy)
> NSP1: S135R
> NSP13: R392C
The page has a "download" button, which requests
https://www.ncbi.nlm.nih.gov/genomes/VirusVariation/activ/?report=download_lineages
and offers to save it as "lineages.csv".
I think that the information you're looking for is available if you
feed this URL to read.csv() and look at the aa_definition column.
--
Best regards,
Ivan