Warning when running R - can't install packages either
Hi, I?m maintainer of the R package in Alpine Linux. I read on multiple places that some packages needs R_HOME variable set to the location where is R installed, so I?ve added it to the system-wide profile. Is this correct, or a misinformation? What system dependencies does R need to compile modules from CRAN? On Alpine the following dependencies are needed to build R: bzip2-dev curl-dev gfortran lapack-dev pcre-dev perl readline-dev xz-dev zlib-dev. Are all of these dependencies needed for compiling modules? Jakub
On 13. May 2016, at 11:31, Martin Morgan <martin.morgan at roswellpark.org> wrote:
On 05/12/2016 10:25 PM, Alba Pompeo wrote:
Martin Morgan, I tried an HTTP mirror and it worked. What could be the problem and how to fix? Also, should I ignore the warning about ignoring environment value of R_HOME?
It depends on why you set the value in your environment in the first place; maybe you were trying to use a particular installation of R, but setting R_HOME is not the way to do that (I use an alias, e.g., R-3.3='~/bin/R-3-3-branch/bin/R --no-save --no-restore --silent') Martin
Thanks. On Thu, May 12, 2016 at 5:59 PM, Tom Hopper <tomhopper at gmail.com> wrote:
setInternet2() first thing after launching R might fix that.
On May 12, 2016, at 07:45, Alba Pompeo <albapompeo at gmail.com> wrote: Hello. I've tried to run R, but I receive many warnings and can't do simple stuff such as installing packages. Here's the full log when I run it. http://pastebin.com/raw/2BkNpTte Does anyone know what could be wrong here? Thanks a lot.
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