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memory allocation error

Antonio Rodr?guez Verdugo wrote:
I do not remember if you have mentioned which version of R you are
running.
Assuming R >= 1.2.0 you can extend the default (the minimum of physical
installed RAM and 256Mb) by setting the command line flag
--max-mem-size.

Your version of John Maindonalds paper seems to be written for R <
1.2.0.
Maybe you misunderstood Brian's hint:
Please read the FAQs and the help file, especially 
?Memory
The maximum amount of memory R is allowed to consume (defaults to the
minimum of physical installed RAM and 256Mb, as described in ?Memory).
But then also the only which protects you getting into trouble with
endless swapping activity.

Uwe Ligges
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