trouble installing Rmpi on a debian machine
Quoting Erin Hodgess <erinm.hodgess at gmail.com>:
Dear R People: I'm having trouble installing Rmpi on a debian machine. Here is my output: bccd at node000:~$ /bccd/home/bccd bccd at node000:~$ bccd at node000:~$ export RMPI_TYPE=OPENMPI bccd at node000:~$ R CMD INSTALL Rmpi_0.5-9.tar.gz * installing to library '/bccd/home/bccd/R/x86_64-pc-linux-gnu-library/2.15'
[...]
ERROR: compilation failed for package 'Rmpi' * removing '/bccd/home/bccd/R/x86_64-pc-linux-gnu-library/2.15/Rmpi' bccd at node000:~$ Now the strangest thing is that I installed Rmpi on a Rocks Cluster on Tuesday with no trouble. Any suggestions would be most appreciated.
I suspect you omitted a few deb packages before you started. I have some notes I made a few years ago when I installed Rmpi on a Kubuntu machine, so it should be fairly similar to yours. Make the appropriate changes if you use something different from aptitude for handling packages. sudo aptitude install openmpi-common sudo aptitude install openmpi-binsudo sudo aptitude install libhdf5-openmpi-1.6.6-0 sudo aptitude install libhdf5-openmpi-dev sudo aptitude install openmpi-bin HTH Patrick
Sincerely, Erin -- Erin Hodgess Associate Professor Department of Computer and Mathematical Sciences University of Houston - Downtown mailto: erinm.hodgess at gmail.com
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