repeated - R package - Compilation Error

Thu, Aug 11, 2005 5:54 AM

On Wed, 10 Aug 2005 rab45+ at pitt.edu wrote:

Thompson's Manual to Accompany Agresti's book refers to a package named
"repeated". It's not on CRAN from what I can see. I have seen rpm's for
it. Where is the best place to download this package?

See the FAQ, Q5.1.5.  As to the `best' place, it is hard to say as the
URI
keeps changing: currently it seems to be
http://popgen.unimaas.nl/~jlindsey/rcode.html.

--
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595

I downloaded from the site you suggested but I get an error when
installing:

drwxr-xr-x  5 root   root     4096 Apr 25  2003 repeated
-rw-rw-r--  1 chippy chippy 176563 Aug 10 17:05 repeated.tgz
[root at ophth-bilora R]# man R
[root at ophth-bilora R]# R CMD INSTALL repeated
* Installing *source* package 'repeated' ...
** libs
gfortran   -fPIC  -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32
-march=i386 -mtune=pentium4 -fasynchronous-unwind-tables -c chidden.f -o
chidden.o
gfortran   -fPIC  -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32
-march=i386 -mtune=pentium4 -fasynchronous-unwind-tables -c cphidden.f -o
cphidden.o
gcc -I/usr/lib/R/include  -I/usr/local/include   -fPIC  -O2 -g -pipe
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4
-fasynchronous-unwind-tables -c cutil.c -o cutil.o
gcc -I/usr/lib/R/include  -I/usr/local/include   -fPIC  -O2 -g -pipe
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4
-fasynchronous-unwind-tables -c dist.c -o dist.o
gcc -I/usr/lib/R/include  -I/usr/local/include   -fPIC  -O2 -g -pipe
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4
-fasynchronous-unwind-tables -c gar.c -o gar.o
gfortran   -fPIC  -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32
-march=i386 -mtune=pentium4 -fasynchronous-unwind-tables -c hidden.f -o
hidden.o
gcc -I/usr/lib/R/include  -I/usr/local/include   -fPIC  -O2 -g -pipe
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4
-fasynchronous-unwind-tables -c kcountb.c -o kcountb.o
gcc -I/usr/lib/R/include  -I/usr/local/include   -fPIC  -O2 -g -pipe
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4
-fasynchronous-unwind-tables -c kserieb.c -o kserieb.o
gfortran   -fPIC  -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32
-march=i386 -mtune=pentium4 -fasynchronous-unwind-tables -c logitord.f -o
logitord.o
gfortran   -fPIC  -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32
-march=i386 -mtune=pentium4 -fasynchronous-unwind-tables -c binnest.f -o
binnest.o
 In file binnest.f:638

             Gradient(t1+t2+kk) = Gradient(t1+t2+kk) + (D1_Sig2(kk) / Li
                                                                       1
Error: Expected a right parenthesis in expression at (1)
make: *** [binnest.o] Error 1
ERROR: compilation failed for package 'repeated'

I guess I can go in and fix this and try re-compiling.

Rick B.

When I go into binnest.f, here is what I see:

C       Calculate First Derivative
	   Do kk = 1, t1
	      Gradient(kk) = Gradient(kk) + (D1_beta(kk) / Li)
	   End do
	   Do kk = 1, t2
	      Gradient(t1+kk) = Gradient(t1+kk) + (D1_Sig1(kk) / Li)
	   End do
	   Do kk = 1, t3
line 638 ->Gradient(t1+t2+kk) = Gradient(t1+t2+kk) + (D1_Sig2(kk) / Li)
	   End do

As you can see, line 638 looks just fine.

Why do I get a compilation error?

Rick B.

repeated - R package - Compilation Error

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