Message-ID: <7b7a3d74-ab0d-9b3e-561b-92c69ce8727a@simecol.de>
Date: 2017-02-26T11:55:59Z
From: Thomas Petzoldt
Subject: non-linear optimisation ODE models
In-Reply-To: <88737E56-C873-4ACE-89A2-A63E27AE0382@comcast.net>
Hi,
fitting ODE models may also be done with package FME, see:
Soetaert K, Petzoldt T. Inverse modelling, sensitivity and Monte Carlo
analysis in R using package FME. Journal of Statistical Software.
2010(33): 1?28. http://dx.doi.org/10.18637/jss.v033.i03
or the (interactive) poster at:
http://desolve.r-forge.r-project.org/user2014/examples/FME/fit_twocomp.svg
Regards,
Thomas P.
Am 16.02.2017 um 19:41 schrieb David Winsemius:
>
>> On Feb 15, 2017, at 1:43 PM, Jim Lemon <drjimlemon at gmail.com> wrote:
>>
>> Hi Malgorzata,
>> The function "rxnrate" seems to want three values in a list with the
>> names "k1", "k2" and "k3". If you are passing something with different
>> names, it is probably going to complain, so the names "A", "B" and "C"
>> may be your problem. I can't run the example, so this is a guess.
>
> There's a more readable version at:
> http://stackoverflow.com/questions/42256509/how-to-feed-data-into-ide-while-doing-optimisation
>
> It can be run, but does not produce the errors offered when I do so.
>