Message-ID: <CA+JEM00PxyubjD=iBGvSD2yA51+QKq1Eypi1QCELcH6=j+sp1Q@mail.gmail.com>
Date: 2022-03-24T01:45:03Z
From: Bogdan Tanasa
Subject: help with installing R packages on Mac : these packages are downloaded but not compiled
In-Reply-To: <CCDECD6C-8741-4F97-A3CA-C43FCE11BB9C@dcn.davis.ca.us>
Thank you Jeff.
Well, the same messages I do receive not only I do install "tidyverse" but
also any other packages from BioConductor ;
specifically, the packages are downloaded but not compiled and not
installed.
I believe that it is a more global R issue with Mac Monterey, although I do
not know how to solve it. Thanks,
Bogdan
On Wed, Mar 23, 2022 at 6:42 PM Jeff Newmiller <jdnewmil at dcn.davis.ca.us>
wrote:
> Tidyverse has dozens of dependencies... and when a dependency fails to
> install then you often need to install it explicitly... the automatic
> dependency algorithm doesn't seem to work robustly.
>
> Carefully read your error messages... it looks like you should start by
> installing backports.
>
> On March 23, 2022 5:52:29 PM PDT, Bert Gunter <bgunter.4567 at gmail.com>
> wrote:
> >Mac specific issues generally belong on the R-sig-mac list, not here(I
> >of course don't know whether this is Mac specific or not. Folks on the
> >Mac list presumably would).
> >
> >
> >Bert Gunter
> >
> >"The trouble with having an open mind is that people keep coming along
> >and sticking things into it."
> >-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
> >
> >On Wed, Mar 23, 2022 at 5:41 PM Bogdan Tanasa <tanasa at gmail.com> wrote:
> >>
> >> Dear all,
> >>
> >> I would appreciate to have your prompt help please on the following
> issue :
> >>
> >> I am the process of installing R and R packages on MacOS Monterrey.
> >>
> >> The packages are downloaded but not compiled and are not installed, as
> >> shown below.
> >>
> >> I would appreciate any help that you can offer please. Thank you.
> >>
> >> > install.packages("tidyverse", dependencies=T)
> >> Installing package into
> >> ?/Users/btanasa/Library/R/x86_64/4.1/library?(as ?lib? is unspecified)
> >> trying URL '
> https://cran.rstudio.com/bin/macosx/contrib/4.1/tidyverse_1.3.1.tgz'
> >> Content type 'application/x-gzip' length 421072 bytes (411
> >> KB)==================================================
> >> downloaded 411 KB
> >>
> >>
> >> The downloaded binary packages are in
> >>
> /var/folders/j1/vfxkcdz51l945jpfb2vplcsw47dvp9/T//RtmpYudPdW/downloaded_packages>
> >> > > library("tidyverse")
> >> Error: package or namespace load failed for ?tidyverse?:
> >> .onLoad failed in loadNamespace() for 'broom', details:
> >> call: loadNamespace(x)
> >> error: there is no package called ?backports?
> >>
> >> [[alternative HTML version deleted]]
> >>
> >> ______________________________________________
> >> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> >> https://stat.ethz.ch/mailman/listinfo/r-help
> >> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> >> and provide commented, minimal, self-contained, reproducible code.
> >
> >______________________________________________
> >R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> >https://stat.ethz.ch/mailman/listinfo/r-help
> >PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> >and provide commented, minimal, self-contained, reproducible code.
>
> --
> Sent from my phone. Please excuse my brevity.
>
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