Genotypes are not all the same
Farrel Buchinsky <fjbuch <at> gmail.com> writes:
Clearly g1 and g2 are not exactly the same even though they are the same class. I can make g2 behave as g1 if i type g3<-genotype(g2) g3 then behaves as it should. The issue may have arrisen since g2 is just a subset of a much bigger object that was created using reshape command in the base package or maybe melt and cast in the reshape package. Can anyone enlighten me?
genotype class behaves internally much like factor class. I guess that levels/alleles were dropped somewhere. You have to figure out where this happened. Gregor