Can't install packages from ESS command line after upgrading to R 3.3.2 on MacOS
On Dec 13, 2016, at 8:15 AM, Gon?alo Ferraz <gferraz29 at gmail.com> wrote: Hi, I just upgraded R to version 3.3.2 on a Mac OS X system. I suspect something may have gone wrong with the installation (despite a ?successfully installed? message) because the R.App is nowhere to be found.
There are two different installation packages. One has the GUI and one doesn't. Which one did you use? And this is really coming to the wrong mailing list: Should have been directed to: R-SIG-Mac at r-project.org
Nevertheless, I can open R in ESS. The problem is I can?t install packages from there. Here is an example of the error message:
install.packages("rjags")
--- Please select a CRAN mirror for use in this session --- trying URL 'https://vps.fmvz.usp.br/CRAN/bin/macosx/mavericks/contrib/3.3/rjags_4-6.tgz' Content type 'application/x-gzip' length 249529 bytes (243 KB) ================================================== downloaded 243 KB The downloaded binary packages are in /var/folders/kf/zkk64rtj5197pzwq94qfls0w0000gn/T//RtmpuSb7P1/downloaded_packages
rjags requires an external package to be installed to be functional
packageDescription('rjags')
# SystemRequirements: JAGS 4.x.y
Is that done?
library(rjags)
Loading required package: coda Error : .onLoad failed in loadNamespace() for 'rjags', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so': dlopen(/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib Referenced from: /Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so Reason: image not found Error: package or namespace load failed for ?rjags?
So, is there a symlink in that directory?
Does anyone know what may be going on? Thank you, Gon?alo
David Winsemius Alameda, CA, USA