Antwort: Re: Antwort: Re: Re: sink(): Cannot open file

George,
I do not know what operating system you are working with, but when I use 

sink("c:\myfile.txt")

  R code goes here
sink()

with the expectation that I would create a file myfile.txt that would 

John


John David Sorkin M.D., Ph.D.
Professor of Medicine
Chief, Biostatistics and Informatics
University of Maryland School of Medicine Division of Gerontology and 

Baltimore VA Medical Center
10 North Greene Street
GRECC (BT/18/GR)
Baltimore, MD 21201-1524
(Phone) 410-605-7119
(Fax) 410-605-7913 (Please call phone number above prior to faxing)

<G.Maubach at weinwolf.de> 05/10/16 11:10 AM >>>

Hi Jim,

I tried:

sink("all.Rout")
try(log("a"))
sink()

The program executes without warning or error. The file "all.Rout" is
begin created. Nothing will be written to it. The file is accessable
rights after the execution of the program by notepad.exe.

The program

zz <- file("all.Rout", open = "wt")
sink(zz, type = "message")
try(log("a"))
sink()
close(zz)
unlink(zz)

creates the file, does not write anything to it and is not accessable
after program execution in R with notepad.exe.

Any ideas what happens behind the szenes?

Kind regards

Georg




Von: Jim Lemon <drjimlemon at gmail.com>
An: G.Maubach at weinwolf.de,
Kopie: r-help mailing list <r-help at r-project.org>
Datum: 10.05.2016 13:16
Betreff: Re: Re: [R] sink(): Cannot open file



Have you tried:

sink("all.Rout")
try(log("a"))
sink()

Jim

On Tue, May 10, 2016 at 9:05 PM, <G.Maubach at weinwolf.de> wrote:

Hi Jim,

thanks for your reply.

ad 1)
"all.Rout" was created in the correct directory. It exists properly 

correct file properties on Windows, e.g. creation date and time and 

size information.

ad 2)
I can not access the file with Notepad.exe directly after it was 

by R. The error message is (translated):

"Cannot access file "all.Rout". The file is opened by another 

ad 3)
If I close R completely the file access is released. Then I can read 

file using Notepad.exe. The contents is:

Error in log("a") : non-numeric argument to mathematical function

I tried

close(zz)

but the error persists.

To me it looks like R is still accessing the file and not releasing 

connection for other programs. close(zz) should have solved the 

but unfortantely it doesn't.

What else could I try?

Kind regards

Georg




Von: Jim Lemon <drjimlemon at gmail.com>
An: G.Maubach at weinwolf.de,
Kopie: r-help mailing list <r-help at r-project.org>
Datum: 10.05.2016 12:50
Betreff: Re: [R] sink(): Cannot open file



Hi Georg,
I don't suppose that you have:

1) checked that the file "all.Rout" exists somewhere?

2) if so, looked at the file with Notepad, perhaps?

3) let us in on the secret by pasting the contents of "all.Rout" into
your message if it is not too big?

At a guess, trying:

close(zz)

might get you there.

Jim

On Tue, May 10, 2016 at 5:25 PM, <G.Maubach at weinwolf.de> wrote:

Hi All,

I would like to route the output to a file using sink(). When using 

example from the ?sink documentation:

sink("sink-examp.txt")
i <- 1:10
outer(i, i, "*")
sink()
unlink("sink-examp.txt")

## capture all the output to a file.
zz <- file("all.Rout", open = "wt")
sink(zz)
sink(zz, type = "message")
try(log("a"))
## back to the console
sink(type = "message")
sink()
file.show("all.Rout")

I can not open the file in Windows Explorer. The error message is:

"Cannot open file. File is in use be another proces."

How can I close the file in a manner that I can open it right after 

was

created?

Kind regards

Georg