Help with bibliometrix and biblioshiny
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So for a specialized package like bibliometrix, though you might get
lucky here, you should probably contact the maintainers. I also noted
that the package has its own web page with a FAQ and other resources.
Have you consulted them yet? There might also be a user community
that could help, but I did not see it in my brief look around.
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
On Sun, Sep 5, 2021 at 8:20 AM Bruno C?sar Juliatti
<brunojuliatti at gmail.com> wrote:
Hi, everyone. I'm new in this R language universe. I want to use
bibliometric as a research in m Master's program. I run the code in R
studio and works just fine. But, in the web-interface (biblioshiny), I load
the table in .csv and keeps showing this message: Error: object 'M' not
found
PS: I already exported the searches in Web of Science and Scopus.
This is the code and below the console's messages.
*install.packages("bibliometrix")* # Baixar o pacote. S? precisa fazer isso
uma #vez! E demora muito, por vezes muitos minutos!
#library(bibliometrix) # carregar o pacote na mem?ria para utiliz?-lo
agora.
# D?vidas de uso do Bibliometrix, execute o comando que segue:
help(bibliometrix)
#Artigo: CAPACIDADE ESTATAL
#AUTORES: PATR? CIA ROSVADOSKI-DA-SILVA, WELLES ABREU
#OBJETIVO -> Caracterizar e clusterizar os trabalhos de capacidade estatal
#######COLETA DOS DADOS ##############
#WEB OF SCIENCE
#Pesquisa B??sica
# vari??veis da pesquisa: BOLEADORES -> AND, OR , NOT
############ ATEN????O: ASPAS (") E *
# configura????es
#Filtros ##########ATEN????O: ANOTAR TODOS OS PASSOS
# EXPORTAR -> Outros formatos de arquivo
# Registro completo de refer??ncias citadas (m??ximo de 500)
# bibtex. OBS-> Salvar arquivo: ser?? gerado um arquivo #???savedrecs.bib??
na ??rea de downloads
#SCOPUS
#PESQUISA
#CAMPOS
# FILTROS -> Data range, document type, Access type
#FILTROS
#EXPORT -> Bibtex (citation information, Bibliographical information,
Abstract & keywords, Funding details, Other information -> Export)
#limite de 2000 artigos, Salvar arquivo: ser?? gerado um arquivo
#???scopus.bib?? na ??rea de downloads
############### ETAPA 1 - CARREGAMENTO E CONVERS?O DOS DADOS ###############
# WEB OF SCIENCE (ISI): Converter os dados para o padr?o do bibliometrix
*W <- convert2df("C:/Users/bruno/Desktop/Bibliometria/wos_scielo.bib",
dbsource = "isi", format = "bibtex")*
#W1 <- convert2df("/Users/user/OneDrive/Curriculum/Artigos em
andamento/Cooperativismo/WOS/savedrecs (12).bib", dbsource = "isi", format
= "bibtex")
#W2 <- convert2df("/Users/user/OneDrive/Curriculum/Artigos em
andamento/Cooperativismo/WOS/savedrecs (13).bib", dbsource = "isi", format
= "bibtex")
#W3 <- convert2df("/Users/user/OneDrive/Curriculum/Artigos em
andamento/Cooperativismo/WOS/savedrecs (14).bib", dbsource = "isi", format
= "bibtex")
#W4 <- convert2df("/Users/user/OneDrive/Curriculum/Artigos em
andamento/Cooperativismo/WOS/savedrecs (15).bib", dbsource = "isi", format
= "bibtex")
#W <- mergeDbSources(W1, W2, W3, W4)
# SCOPUS: Converter os dados para o padr?o do bibliometrix
*S <-convert2df("C:/Users/bruno/Desktop/Bibliometria/scopus_elsevier.bib",
dbsource = "scopus", format = "bibtex")*
#S2 <- convert2df("/Users/user/OneDrive/Curriculum/Artigos em
andamento/Cooperativismo/Scopus/scopus (2).bib", dbsource = "scopus",
format = "bibtex")
#S3 <- convert2df("/Users/user/OneDrive/Curriculum/Artigos em
andamento/Cooperativismo/Scopus/scopus (4).bib", dbsource = "scopus",
format = "bibtex")
#S4 <- convert2df("/Users/user/OneDrive/Curriculum/Artigos em
andamento/Cooperativismo/Scopus/scopus (5).bib", dbsource = "scopus",
format = "bibtex")
#S5 <- convert2df("/Users/user/OneDrive/Curriculum/Artigos em
andamento/Cooperativismo/Scopus/scopus (6).bib", dbsource = "scopus",
format = "bibtex")
#S6 <- convert2df("/Users/user/OneDrive/Curriculum/Artigos em
andamento/Cooperativismo/Scopus/scopus (7).bib", dbsource = "scopus",
format = "bibtex")
#S7 <- convert2df("/Users/user/OneDrive/Curriculum/Artigos em
andamento/Cooperativismo/Scopus/scopus (8).bib", dbsource = "scopus",
format = "bibtex")
#S8 <- convert2df("/Users/user/OneDrive/Curriculum/Artigos em
andamento/Cooperativismo/Scopus/scopus (9).bib", dbsource = "scopus",
format = "bibtex")
#S9 <- convert2df("/Users/user/OneDrive/Curriculum/Artigos em
andamento/Cooperativismo/Scopus/scopus (10).bib", dbsource = "scopus",
format = "bibtex")
#S10 <- convert2df("/Users/user/OneDrive/Curriculum/Artigos em
#andamento/Cooperativismo/Scopus/scopus (11).bib", dbsource = "scopus",
#format = "bibtex")
#S <- mergeDbSources(S1, S2, S3, S4, S5, S6, S7, S8, S9, S10)
# PUBMED: Se desejar caregar dado, execute o script do PubMed, gerando o
#arquivo de dados "C"
# COCHRANE: Se desejar carregar dados execute a linha que segue, gerando
#o arquivo de dados "D"
# D <- convert2df("c:/bib/citation-export.bib", dbsource = "isi", format =
"bibtex")
#### Juntar bases WEB OF SCIENCE (ISI), SCOPUS, PUBMED e #COCHRANE
*M <- mergeDbSources(W, S, remove.duplicated = TRUE)*
# se precisar juntar dados do Pubmed e Cochrane, execute linha que segue
# M <- mergeDbSources(A, B, C, D, remove.duplicated = TRUE)
#### Cria um arquivo.csv para importar para o Excel
*P<- M[,c("AU","TI","SO","AB","DE", "ID", "DI","LA","DT","TC","PY")] * #
#Cria lista na ordem desejada
*write.table(P, "C:/Users/bruno/Desktop/Bibliometria/opa.csv", sep=";",
row.names=FALSE)* # para gerar com separador ";", sem necessidade de
#ajustar o CSV, quanto ? primeira coluna
#### BiblioAnalysis - Processamento dos dados
*resultados <- biblioAnalysis(M)*
############### ETAPA 2 - AN?LISE e VISUALIZA??O DOS DADOS ###############
#### 2.1 - Resumo dos resultados na console do RStudio
*Resumo <- summary(object = resultados, k = 10)Resumoplot(resultados, k=10)*
# Gr?ficos com dados bibliom?tricos b?sicos
*plot*
# Para visualizar os resultados via web-interface (browser)
*biblioshiny()*
#### Para mais informa??es, tutoriais e v?deos, acessar
www.bibliometrix.org/
This is the console's message about the error:
*Warning: Error in eventReactiveValueFunc: object 'M' not found 149:
eventReactiveValueFunc
[C:\Users\bruno\OneDrive\Documentos\R\win-library\4.1\bibliometrix\biblioshiny/server.R#321]
105: DATAloading 104: exprFunc
[C:\Users\bruno\OneDrive\Documentos\R\win-library\4.1\bibliometrix\biblioshiny/server.R#330]
103: widgetFunc 102: htmlwidgets::shinyRenderWidget 101: func 88:
renderFunc 87: renderFunc 83: renderFunc 82: output$contents 2:
runApp*
* 1: biblioshiny *
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