Message-ID: <20090206173817.20107xtjonyazkpc@webmail.cryst.bbk.ac.uk>
Date: 2009-02-06T17:38:17Z
From: Eleni Rapsomaniki
Subject: Using subset in validate() in Design, what is the correct syntax?
Hi
I am trying to understand how to get the validate() function in Design
to work with the subset option. I tried this:
ovarian.cph=cph(Surv(futime, fustat) ~ age+factor(ecog.ps)+strat(rx),
time.inc=1000, x=T, y=T, data=ovarian)
validate(ovarian.cph)
#fine when no subset is used, but the following two don't work:
> validate(ovarian.cph, subset=ovarian$ecog.ps==2)
Error in order(c(1L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 2L, 2L, :
argument lengths differ
> validate(ovarian.cph, subset=ovarian[ovarian$ecog.ps==2,])
Error in predab.resample(fit, method = method, fit = cox.fit, measure
= discrim, :
length of subset does not match # rows used in fit
Any suggestions?
Also, is it possible to use the subset option with calibrate as well?
It would be good to be able to plot the cox fit vs. the KM fit for
different age groups for example.
Many many thanks!
Eleni