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orientation of eps files

Yes, and it happens because by default R's plots have rotated text on the 
y axis, and it is this that tends to trigger auto-rotation.

The answer is in

https://www.stat.math.ethz.ch/pipermail/r-devel/2003-October/027766.html

various other items in the thread being off the point.
On Wed, 2 Mar 2005, Roger D. Peng wrote: