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Chi-Square test and survey results

The chisq.test function is expecting a contingency table, basically one column should have the count of respondents and the other column should have the count of non-respondents (yours looks like it is the total instead of the non-respondents), so your data is wrong to begin with.  A significant chi-square here just means that the proportion responding differs in some of the regions, that does not mean that the sample is representative (or not representative).  What is more important (and not in the data or standard tests) is if there is a relationship between why someone chose to respond and the outcomes of interest.

If you are concerned with different proportions responding then you could do post-stratification to correct for the inequality when computing other summaries or tests (though region 6 will still give you problems, you will need to make some assumptions, possibly combine it with another region that is similar).

Throwing away data is rarely, if ever, beneficial.